View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3442_low_6 (Length: 242)
Name: NF3442_low_6
Description: NF3442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3442_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 45036352 - 45036572
Alignment:
| Q |
1 |
tccaactttaacacaactttctgtaacaaaaatatcaagtagttgttagaacagaacacttactttccttctaactctaaaactaagattaccaaagaac |
100 |
Q |
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| T |
45036352 |
tccaactttaacacaactttctgtaacaaaaatatcaagtagttgttagaacagaacacttactttccttctaactctaaaactaagattaccaaagaac |
45036451 |
T |
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| Q |
101 |
tagttgaaaattcaccaatcatactttagctatgatgaaggagataaaaagtggttgagattaatcaaggtaaagtattaactaaccttcatattgttat |
200 |
Q |
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| T |
45036452 |
tagttgaaaattcaccaatcatactttagctatgatgaaggagataaaaagtggtt----ttaatgaaggtaaagtattaactaaccttcatattgttat |
45036547 |
T |
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| Q |
201 |
ggaagctactgagctgaggtagaag |
225 |
Q |
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| T |
45036548 |
ggaagctactgagctgaggtagaag |
45036572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 46175992 - 46176048
Alignment:
| Q |
169 |
ggtaaagtattaactaaccttcatattgttatggaagctactgagctgaggtagaag |
225 |
Q |
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| T |
46175992 |
ggtaaagtattaactaaccttcatattgttatggaagcttatgagctaaggtagaag |
46176048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 45043855 - 45043953
Alignment:
| Q |
106 |
gaaaattcaccaatcatactttagctatgatgaaggagataaaa-agtggttgagattaatcaaggtaaagtattaactaaccttcatattgttatggaa |
204 |
Q |
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| T |
45043855 |
gaaaatttaccaatcgtgcattagatatgatcaagaagataaaagagtggtt----ttaatcagggtaaagtattaactaaccttcatattgatatggaa |
45043950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 45041638 - 45041710
Alignment:
| Q |
1 |
tccaactttaacacaactttctgtaacaaaaatatcaagtagttgttagaacagaacacttactttccttcta |
73 |
Q |
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| T |
45041638 |
tccaactttaacacaactttctgtcatggaaaaatcaagtatttgttagcactgaacactcactttctttcta |
45041710 |
T |
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