View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3442_low_8 (Length: 232)
Name: NF3442_low_8
Description: NF3442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3442_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 39226011 - 39226210
Alignment:
| Q |
15 |
caaaggacaacaatcatggtgcaaatagcaaagtcctttagcagcttcagttgctattttcaccctaacatcccactcaagaaacccccctcttttccca |
114 |
Q |
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| T |
39226011 |
caaaggacaacaatcatggtgcaaatagcaaagtcctttagcagcttcagttgctattttcaccctaacatcccactcaagaaacccccctcttttccca |
39226110 |
T |
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| Q |
115 |
tgcaacacttcacctaaactaccatttgtcatgtactcataaacaagcaaattagtgtctctatttgaacaaaatgctaacaacttcacaatgtatctgt |
214 |
Q |
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| T |
39226111 |
tgcaacacttcacctaaactaccatttgtcatgtactcataaacaagcaaattagtgtctctatttgaacaaaatgctaacaacttcacaatgtatctgt |
39226210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 23 - 191
Target Start/End: Complemental strand, 16735206 - 16735038
Alignment:
| Q |
23 |
aacaatcatggtgcaaatagcaaagtcctttagcagcttcagttgctattttcaccctaacatcccactcaagaaacccccctcttttcccatgcaacac |
122 |
Q |
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| T |
16735206 |
aacaatcatgatgcaaataacaaagtcctttagcagcttcaacagcaattttcaacctaacattccatttcaaaaactcacctctttttccatgcaaaac |
16735107 |
T |
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| Q |
123 |
ttcacctaaactaccatttgtcatgtactcataaacaagcaaattagtgtctctatttgaacaaaatgc |
191 |
Q |
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| T |
16735106 |
ttcaccaaggctaccattttccatgtaatcataaacaagcaaatttgtttctttgtttgtacaaaatgc |
16735038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 26735964 - 26735925
Alignment:
| Q |
23 |
aacaatcatggtgcaaatagcaaagtcctttagcagcttc |
62 |
Q |
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| T |
26735964 |
aacaatcatggtgcaaatagcaaagtcccttagcagcttc |
26735925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 36941918 - 36941954
Alignment:
| Q |
128 |
ctaaactaccatttgtcatgtactcataaacaagcaa |
164 |
Q |
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| T |
36941918 |
ctaaactaccatttggcatgtactcatacacaagcaa |
36941954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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