View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3442_low_9 (Length: 218)
Name: NF3442_low_9
Description: NF3442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3442_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 49908510 - 49908607
Alignment:
| Q |
10 |
tcgaagaatattaacttcatccatcctacaaaagtcacatattcatgccaagacaaattatccatcctaaatgccc-tatccccgtcatcttagtgcc |
106 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
49908510 |
tcgaataaaattaacttcatccatcctacaaaagtcacatattcatgccaagacaaattatccatcctaaatgcccttatccccgtcatcttagtgcc |
49908607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University