View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3443_high_1 (Length: 263)
Name: NF3443_high_1
Description: NF3443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3443_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 41562885 - 41563126
Alignment:
| Q |
17 |
agagaagaaacaaagctaaagagataaaagatatggcttataaggctgttgaagatggtggatcttctgattcaaattgcaaattgtttatacaaga--a |
114 |
Q |
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| T |
41562885 |
agagaagaaacaaagcaaaagagataaaagatatggcttataaggctgttgaagatggtggatcttctgattcaaattgcaaattgtttatacaagagaa |
41562984 |
T |
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| Q |
115 |
attgtagagaaaagttcataatcaatgattaagcataccaaaatagttctattgtgacaatagattatgtcatcagagactaatttataaaagacttgac |
214 |
Q |
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| T |
41562985 |
attgtagagaaaagttcataatcaat-attaagcataccaaaaaagttctattgtgacaatagattatgtcatcagagactaatttataaaagacttgac |
41563083 |
T |
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| Q |
215 |
tttacaaatttaaagtgacaaataagtctttaatgatgatgtc |
257 |
Q |
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| T |
41563084 |
tttacaaatttaaagtgacacataagtctttaatgatgatgtc |
41563126 |
T |
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Back To:
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Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 46657195 - 46657264
Alignment:
| Q |
66 |
tgaagatggtggatcttctgattcaaattgcaaattgtttatacaagaaattgtagagaaaagttcataa |
135 |
Q |
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| T |
46657195 |
tgaagatggtggatcttctgattcaaattgcaaattgtttatacaagaaattgtagagcaaagctcataa |
46657264 |
T |
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