View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3443_low_2 (Length: 254)

Name: NF3443_low_2
Description: NF3443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3443_low_2
NF3443_low_2
[»] chr6 (7 HSPs)
chr6 (36-242)||(3175429-3175625)
chr6 (91-223)||(28498317-28498450)
chr6 (91-223)||(29810728-29810861)
chr6 (179-217)||(15913927-15913965)
chr6 (91-220)||(26463185-26463315)
chr6 (157-217)||(7905252-7905312)
chr6 (157-217)||(31406887-31406947)
[»] chr5 (7 HSPs)
chr5 (98-223)||(40148901-40149027)
chr5 (90-223)||(40150105-40150239)
chr5 (157-217)||(8875458-8875518)
chr5 (120-223)||(24141455-24141559)
chr5 (175-217)||(20152790-20152832)
chr5 (182-223)||(42067908-42067949)
chr5 (157-217)||(8875624-8875684)
[»] chr2 (10 HSPs)
chr2 (120-221)||(6589680-6589782)
chr2 (120-223)||(28230060-28230164)
chr2 (91-229)||(3653372-3653510)
chr2 (157-225)||(202715-202783)
chr2 (179-223)||(28228673-28228717)
chr2 (176-225)||(199022-199071)
chr2 (168-217)||(8342196-8342245)
chr2 (123-220)||(43742000-43742098)
chr2 (168-217)||(6573056-6573105)
chr2 (168-217)||(8710836-8710885)
[»] chr8 (6 HSPs)
chr8 (120-223)||(2535871-2535975)
chr8 (179-223)||(11763057-11763101)
chr8 (157-223)||(10749867-10749933)
chr8 (175-217)||(35634474-35634516)
chr8 (157-214)||(27500435-27500492)
chr8 (157-218)||(44664516-44664577)
[»] chr3 (12 HSPs)
chr3 (175-225)||(6956249-6956299)
chr3 (120-223)||(47856390-47856494)
chr3 (157-223)||(43607783-43607849)
chr3 (157-223)||(1079580-1079646)
chr3 (120-223)||(21186016-21186120)
chr3 (179-223)||(23276364-23276408)
chr3 (168-217)||(13948789-13948838)
chr3 (182-223)||(25108479-25108520)
chr3 (168-217)||(32306792-32306841)
chr3 (179-224)||(32431573-32431618)
chr3 (157-218)||(33154885-33154946)
chr3 (179-223)||(1078540-1078584)
[»] chr7 (9 HSPs)
chr7 (96-143)||(11397462-11397509)
chr7 (120-219)||(18855975-18856075)
chr7 (157-217)||(43266275-43266335)
chr7 (175-217)||(23058438-23058480)
chr7 (168-217)||(43266634-43266683)
chr7 (120-223)||(13384505-13384609)
chr7 (179-223)||(18087719-18087763)
chr7 (120-223)||(18855413-18855517)
chr7 (106-150)||(20426637-20426681)
[»] chr4 (17 HSPs)
chr4 (119-217)||(10203630-10203729)
chr4 (120-223)||(30641523-30641625)
chr4 (179-223)||(29321286-29321330)
chr4 (179-223)||(30642527-30642571)
chr4 (120-223)||(32062592-32062696)
chr4 (179-223)||(40388487-40388531)
chr4 (179-223)||(41583612-41583656)
chr4 (157-217)||(54858917-54858977)
chr4 (179-222)||(11446274-11446317)
chr4 (163-217)||(39701272-39701326)
chr4 (168-217)||(52573596-52573645)
chr4 (157-217)||(11523958-11524018)
chr4 (179-223)||(32063717-32063761)
chr4 (179-223)||(40317044-40317088)
chr4 (179-223)||(40327118-40327162)
chr4 (179-223)||(40387470-40387514)
chr4 (179-223)||(41582450-41582494)
[»] chr1 (6 HSPs)
chr1 (120-223)||(32132307-32132411)
chr1 (156-217)||(35038464-35038525)
chr1 (179-218)||(44522155-44522194)
chr1 (168-217)||(40714811-40714860)
chr1 (157-217)||(40714453-40714513)
chr1 (157-217)||(49955704-49955764)
[»] scaffold0771 (1 HSPs)
scaffold0771 (168-217)||(929-978)
[»] scaffold0388 (1 HSPs)
scaffold0388 (157-217)||(12596-12656)
[»] scaffold0328 (1 HSPs)
scaffold0328 (157-217)||(11497-11557)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 8e-73; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 36 - 242
Target Start/End: Complemental strand, 3175625 - 3175429
Alignment:
Q  36 acaaaaggactaggttaaagaccaagcggttggagaaagggtgataatggattgtgtggtagtgattaattgggatgggagactaaattttagatgatta 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  3175625 acaaaaggactaggttaaagaccaagcggttggagaaagggtgataatggattgtgtggcagtgattaattgggatgagagactaaattttagatgatta 3175526  T
Q  136 aattttgtgagggtagtttgtaggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacatattaaaacttaactttaa 235  Q
    ||||||||||| ||||||||||||||||||| |||||  ||| ||||||||||||||  ||        |||||||||||||||||||||||||||||||    
T  3175525 aattttgtgagtgtagtttgtaggatcaacgattacagtgaccaatttttaaatgaa--tt--------ggacgaaacacatattaaaacttaactttaa 3175436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 223
Target Start/End: Original strand, 28498317 - 28498450
Alignment:
Q  91 gtggtagtgattaattgggatgggagactaaattttagatgattaaattttgtgagggtagtttgt-aggatcaacggttacatcgactaatttttaaat 189  Q
    |||| ||||||||| |||| |  | ||| |||||||| ||||||||| |||| ||||||||||||  ||||| | || |||||  ||| |||||||||||    
T  28498317 gtggcagtgattaactgggctcagggaccaaattttaaatgattaaactttgggagggtagtttgccaggattagcgattacaaggaccaatttttaaat 28498416  T
Q  190 gaaccttaattgcagggacgaaacacatattaaa 223  Q
    || || ||||||||||||||||||||||||||||    
T  28498417 gagccctaattgcagggacgaaacacatattaaa 28498450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 223
Target Start/End: Original strand, 29810728 - 29810861
Alignment:
Q  91 gtggtagtgattaattgggatgggagactaaattttagatgattaaattttgtgagggtagtttgt-aggatcaacggttacatcgactaatttttaaat 189  Q
    |||| ||||||||| |||| |  | ||| |||||||| ||||||||| |||| ||||||||||||  | ||| |  | |||||  ||| |||||||||||    
T  29810728 gtggcagtgattaactgggctcagggaccaaattttaaatgattaaactttgggagggtagtttgccatgattagtgattacaaggaccaatttttaaat 29810827  T
Q  190 gaaccttaattgcagggacgaaacacatattaaa 223  Q
    || || ||||||||||||||||||||||||||||    
T  29810828 gagccctaattgcagggacgaaacacatattaaa 29810861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 15913927 - 15913965
Alignment:
Q  179 aatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  15913927 aatttttaaatgacccttaattgcaaggacgaaacacat 15913965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 26463315 - 26463185
Alignment:
Q  91 gtggtagtgattaattgggatgggagactaaattttagatgattaaattttgtgagggtagtttgt-aggatcaacggttacatcgactaatttttaaat 189  Q
    |||| ||||||||| ||||||| | ||| |||||||| ||||||||| ||||  |||||| ||||  ||||| ||||  ||||  ||| ||||||||||     
T  26463315 gtggcagtgattaactgggatgagggacgaaattttaaatgattaaactttgcaagggtaatttgccaggattaacgaatacagggaccaatttttaaac 26463216  T
Q  190 gaaccttaattgcagggacgaaacacatatt 220  Q
    || || ||||||||||||  ||| |||||||    
T  26463215 gacccctaattgcagggatcaaatacatatt 26463185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 7905312 - 7905252
Alignment:
Q  157 aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    ||||| |||| |||||  |||||||||||||||||  | |||||||| |||||||||||||    
T  7905312 aggattaacgattacaaggactaatttttaaatgacgcctaattgcaaggacgaaacacat 7905252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 31406947 - 31406887
Alignment:
Q  157 aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    ||||| |||| |||||  |||||||||||||||||  | |||||||| |||||||||||||    
T  31406947 aggattaacgattacagggactaatttttaaatgacgcctaattgcaaggacgaaacacat 31406887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 98 - 223
Target Start/End: Complemental strand, 40149027 - 40148901
Alignment:
Q  98 tgattaattgggatgggagactaaattttagatgattaaattttgtgagggtagtttg-taggatcaacggttacatcgactaatttttaaatgaacctt 196  Q
    ||||||| ||||||| | ||| || | ||| ||||||||| ||||  |||||| |||| |||||| |||| |||||| ||| ||||||||||||| |  |    
T  40149027 tgattaactgggatgagggaccaattcttaaatgattaaactttgaaagggtaatttgctaggattaacgattacatggaccaatttttaaatgagctct 40148928  T
Q  197 aattgcagggacgaaacacatattaaa 223  Q
    |||||||||||||||||||||||||||    
T  40148927 aattgcagggacgaaacacatattaaa 40148901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 223
Target Start/End: Original strand, 40150105 - 40150239
Alignment:
Q  90 tgtggtagtgattaattgggatgggagactaaattttagatgattaaattttgtgagggtagtttg-taggatcaacggttacatcgactaatttttaaa 188  Q
    ||||| ||||||||||| || || | ||| || | ||| ||||||||| ||||  |||||| |||  |||||| |||| |||||  ||| |||||| |||    
T  40150105 tgtggcagtgattaattaggttgagggaccaattcttaaatgattaaactttgaaagggtaattttctaggattaacgattacagggaccaattttaaaa 40150204  T
Q  189 tgaaccttaattgcagggacgaaacacatattaaa 223  Q
    ||| || |||||||| |||||||||||||||||||    
T  40150205 tgacccctaattgcaaggacgaaacacatattaaa 40150239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 8875518 - 8875458
Alignment:
Q  157 aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    ||||| |||| |||||  |||||||||||||||||  |||||||||| |||||||||||||    
T  8875518 aggattaacgattacagggactaatttttaaatgacgcttaattgcaaggacgaaacacat 8875458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 24141559 - 24141455
Alignment:
Q  120 aaattttagatgattaaattttgtgagggtagtttgt-aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacata 218  Q
    |||||||| ||||||||| ||||  ||| || ||||  ||||| |||| |||||  ||| |||||||||||||    |||||||||||||||||||||||    
T  24141559 aaattttaaatgattaaactttgcaaggctaatttgccaggattaacgattacagggaccaatttttaaatgacgtctaattgcagggacgaaacacata 24141460  T
Q  219 ttaaa 223  Q
    |||||    
T  24141459 ttaaa 24141455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 20152832 - 20152790
Alignment:
Q  175 gactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    |||||||||||||||||  |||||||||| |||||||||||||    
T  20152832 gactaatttttaaatgacgcttaattgcatggacgaaacacat 20152790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 42067908 - 42067949
Alignment:
Q  182 ttttaaatgaaccttaattgcagggacgaaacacatattaaa 223  Q
    |||||||||| || |||||||||||| |||||||||||||||    
T  42067908 ttttaaatgacccctaattgcagggatgaaacacatattaaa 42067949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 8875624 - 8875684
Alignment:
Q  157 aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    ||||| |||| |||||  |||||||||||||||||  | |||||||| |||||||||||||    
T  8875624 aggattaacgattacagggactaatttttaaatgacgcctaattgcaaggacgaaacacat 8875684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 6589680 - 6589782
Alignment:
Q  120 aaattttagatgattaaattttgtgagggtagtttgt-aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacata 218  Q
    |||||||| ||||||||| ||||  |||||| ||||  || || |||| |||||| ||| ||||||||||||| ||||||||||||||||||||||||||    
T  6589680 aaattttaaatgattaaactttgcaagggtaatttgccagaattaacgattacatggaccaatttttaaatgacccttaattgcagggacgaaacacata 6589779  T
Q  219 tta 221  Q
    |||    
T  6589780 tta 6589782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 28230060 - 28230164
Alignment:
Q  120 aaattttagatgattaaattttgtgagggtagtttg-taggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacata 218  Q
    |||||||| ||||||||| ||||  |||||| |||| |||||| |||| |||||  ||| ||||||||||||| || ||||| |||||||||||||||||    
T  28230060 aaattttaaatgattaaactttgaaagggtaatttgctaggattaacgattacagggaccaatttttaaatgacccataattacagggacgaaacacata 28230159  T
Q  219 ttaaa 223  Q
    |||||    
T  28230160 ttaaa 28230164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 229
Target Start/End: Original strand, 3653372 - 3653510
Alignment:
Q  91 gtggtagtgattaattgggatgggagactaaattttagatgattaaattttgtgagggtagtttgtaggatcaacggttacatcgactaatttttaaatg 190  Q
    |||||||||||||| | ||| | | ||| |||||||| ||||||||| ||||  |||||| ||||   ||| |||| |||||| ||| ||||||||||||    
T  3653372 gtggtagtgattaacttggaagagggacgaaattttaaatgattaaactttgcaagggtaatttgccagattaacgattacatggaccaatttttaaatg 3653471  T
Q  191 aaccttaattgcagggacgaaacacatattaaaacttaa 229  Q
    | || ||||| ||||||||| |||| ||||||| |||||    
T  3653472 acccataattacagggacgacacacgtattaaagcttaa 3653510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 202715 - 202783
Alignment:
Q  157 aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacatattaaaac 225  Q
    ||||| |||| |||||| ||| ||||||||||||| || ||||| ||||||| ||||||||||||||||    
T  202715 aggattaacgattacatggacgaatttttaaatgacccctaattacagggacaaaacacatattaaaac 202783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 28228717 - 28228673
Alignment:
Q  179 aatttttaaatgaaccttaattgcagggacgaaacacatattaaa 223  Q
    ||||||||||||| || ||||||||||||||||||||||||||||    
T  28228717 aatttttaaatgacccctaattgcagggacgaaacacatattaaa 28228673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 199071 - 199022
Alignment:
Q  176 actaatttttaaatgaaccttaattgcagggacgaaacacatattaaaac 225  Q
    |||||||||||||||| || ||||||||||||| ||||||||||| ||||    
T  199071 actaatttttaaatgatccctaattgcagggactaaacacatatttaaac 199022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 8342245 - 8342196
Alignment:
Q  168 ttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    |||||| |||||||||||||||||  |||||||||| |||||||||||||    
T  8342245 ttacatagactaatttttaaatgacgcttaattgcaaggacgaaacacat 8342196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 220
Target Start/End: Original strand, 43742000 - 43742098
Alignment:
Q  123 ttttagatgattaaattttgtgagggtagtttgt-aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacatatt 220  Q
    ||||| ||||||||| ||||  |||||| ||||| ||||| || | |||||| ||| ||||||||||||| |   |||||||||||||||| |||||||    
T  43742000 ttttaaatgattaaactttgcaagggtaatttgtcaggattaatgattacatggaccaatttttaaatgacctccaattgcagggacgaaatacatatt 43742098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 6573105 - 6573056
Alignment:
Q  168 ttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    |||||| ||| |||||||||||||  | ||||||||||||||||||||||    
T  6573105 ttacatggacaaatttttaaatgacgcctaattgcagggacgaaacacat 6573056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 8710836 - 8710885
Alignment:
Q  168 ttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    |||||| |||||||||||||||||  | |||||||| |||||||||||||    
T  8710836 ttacatggactaatttttaaatgacgcctaattgcaaggacgaaacacat 8710885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 2535871 - 2535975
Alignment:
Q  120 aaattttagatgattaaattttgtgagggtagtttgt-aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacata 218  Q
    |||||||| ||||||||| ||||| |||||| ||||  ||||| |||| |||||  ||| ||||||||||||| || ||||||||||||||||| |||||    
T  2535871 aaattttaaatgattaaactttgtaagggtaatttgccaggattaacgattacagggaccaatttttaaatgacccctaattgcagggacgaaatacata 2535970  T
Q  219 ttaaa 223  Q
    |||||    
T  2535971 ttaaa 2535975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 11763057 - 11763101
Alignment:
Q  179 aatttttaaatgaaccttaattgcagggacgaaacacatattaaa 223  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  11763057 aatttttaaatgatccttaattgcagggacgaaacacatattaaa 11763101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 10749867 - 10749933
Alignment:
Q  157 aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacatattaaa 223  Q
    ||||| |||| |||||| ||| ||||||||||||| || |||||||| |||||||||||||||||||    
T  10749867 aggattaacgattacatggaccaatttttaaatgatccctaattgcaaggacgaaacacatattaaa 10749933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 35634474 - 35634516
Alignment:
Q  175 gactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    |||||||||||||||||  |||||||||| |||||||||||||    
T  35634474 gactaatttttaaatgacgcttaattgcaaggacgaaacacat 35634516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 27500435 - 27500492
Alignment:
Q  157 aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaaca 214  Q
    ||||| |||| |||||| ||| ||||||||||||| || |||||||| ||||||||||    
T  27500435 aggattaacgattacatggaccaatttttaaatgacccataattgcaaggacgaaaca 27500492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 44664577 - 44664516
Alignment:
Q  157 aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacata 218  Q
    ||||| |||| |||||  |||||||||||||||||  | |||||||| ||||||||||||||    
T  44664577 aggattaacgattacagggactaatttttaaatgacgcctaattgcaaggacgaaacacata 44664516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 6956299 - 6956249
Alignment:
Q  175 gactaatttttaaatgaaccttaattgcagggacgaaacacatattaaaac 225  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  6956299 gactaatttttaaatgatccctaattgcagggacgaaacacatattaaaac 6956249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 47856494 - 47856390
Alignment:
Q  120 aaattttagatgattaaattttgtgagggtagtttgt-aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacata 218  Q
    |||||||| ||||||||| ||||  || ||| ||||| ||||| |||| |||||  ||| |||||||||| ||  |||||||||||||||||||||||||    
T  47856494 aaattttaaatgattaaactttgcaagagtaatttgtcaggattaacgattacaaggaccaatttttaaacgacgcttaattgcagggacgaaacacata 47856395  T
Q  219 ttaaa 223  Q
    |||||    
T  47856394 ttaaa 47856390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 43607849 - 43607783
Alignment:
Q  157 aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacatattaaa 223  Q
    ||||| |||| |||||  ||| |||||||||||||  ||||||||||||||||||||||||||||||    
T  43607849 aggattaacgattacagggaccaatttttaaatgacgcttaattgcagggacgaaacacatattaaa 43607783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 1079580 - 1079646
Alignment:
Q  157 aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacatattaaa 223  Q
    ||||| |||| |||||  ||| ||||||||||||| || |||||||||||| |||||||||||||||    
T  1079580 aggattaacgattacagggaccaatttttaaatgacccctaattgcagggatgaaacacatattaaa 1079646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 21186016 - 21186120
Alignment:
Q  120 aaattttagatgattaaattttgtgagggtagtttgt-aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacata 218  Q
    |||||||| ||||||||  ||||  |||||| ||||  ||||| |||| ||||||  || ||||||||||||| || |||||||| |||| |||||||||    
T  21186016 aaattttaaatgattaaggtttgcaagggtaatttgccaggattaacgattacatgtaccaatttttaaatgacccctaattgcatggacaaaacacata 21186115  T
Q  219 ttaaa 223  Q
    |||||    
T  21186116 ttaaa 21186120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 23276364 - 23276408
Alignment:
Q  179 aatttttaaatgaaccttaattgcagggacgaaacacatattaaa 223  Q
    ||||||||||||| || |||||||||||| |||||||||||||||    
T  23276364 aatttttaaatgacccctaattgcagggatgaaacacatattaaa 23276408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 13948838 - 13948789
Alignment:
Q  168 ttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    |||||| |||||||||||||||||  | |||||||| |||||||||||||    
T  13948838 ttacatggactaatttttaaatgatgcctaattgcaaggacgaaacacat 13948789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 25108479 - 25108520
Alignment:
Q  182 ttttaaatgaaccttaattgcagggacgaaacacatattaaa 223  Q
    |||||||||| || |||||||||||| |||||||||||||||    
T  25108479 ttttaaatgacccctaattgcagggatgaaacacatattaaa 25108520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 32306792 - 32306841
Alignment:
Q  168 ttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    |||||| |||||||||||||||||  | |||||||| |||||||||||||    
T  32306792 ttacattgactaatttttaaatgacgcctaattgcaaggacgaaacacat 32306841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 32431573 - 32431618
Alignment:
Q  179 aatttttaaatgaaccttaattgcagggacgaaacacatattaaaa 224  Q
    ||||||||||||| || ||||| ||||||||||| |||||||||||    
T  32431573 aatttttaaatgacccctaattacagggacgaaatacatattaaaa 32431618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 33154946 - 33154885
Alignment:
Q  157 aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacata 218  Q
    ||||| |||| |||||  ||| ||||||||||||| || |||||||| ||||||||||||||    
T  33154946 aggattaacgattacagggaccaatttttaaatgacccctaattgcatggacgaaacacata 33154885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 1078584 - 1078540
Alignment:
Q  179 aatttttaaatgaaccttaattgcagggacgaaacacatattaaa 223  Q
    ||||||||||||| || |||||||| |||||||| ||||||||||    
T  1078584 aatttttaaatgacccctaattgcatggacgaaaaacatattaaa 1078540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 11397509 - 11397462
Alignment:
Q  96 agtgattaattgggatgggagactaaattttagatgattaaattttgt 143  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||    
T  11397509 agtgattaattgggatgagagactaaattttaaatgattaaattttgt 11397462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 219
Target Start/End: Original strand, 18855975 - 18856075
Alignment:
Q  120 aaattttagatgattaaattttgtgagggtagtttgt-aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacata 218  Q
    |||||||| ||||||||| ||||  |||||| ||||  | ||| |||| |||||  ||| ||||||||||||| || ||||||||||||||||||| |||    
T  18855975 aaattttaaatgattaaactttgcaagggtaatttgccaagattaacgattacagggaccaatttttaaatgacccctaattgcagggacgaaacatata 18856074  T
Q  219 t 219  Q
    |    
T  18856075 t 18856075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 43266335 - 43266275
Alignment:
Q  157 aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    ||||| |||| |||||| |||||||||||||||||  | |||||||| |||||||||||||    
T  43266335 aggattaacgattacatggactaatttttaaatgacgcctaattgcaaggacgaaacacat 43266275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 23058480 - 23058438
Alignment:
Q  175 gactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    |||||||||||||||||  |||||||||| |||||||||||||    
T  23058480 gactaatttttaaatgactcttaattgcaaggacgaaacacat 23058438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 43266634 - 43266683
Alignment:
Q  168 ttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    |||||| |||||||||||||||||  | |||||||| |||||||||||||    
T  43266634 ttacatggactaatttttaaatgacgcctaattgcaaggacgaaacacat 43266683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 13384609 - 13384505
Alignment:
Q  120 aaattttagatgattaaattttgtgagggtagtttg-taggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacata 218  Q
    |||||||| ||||||||  ||||  ||||||||||| |||||| | || |||||  ||| || ||||||  || ||||||||||||||| ||||||| ||    
T  13384609 aaattttaaatgattaacgtttgcaagggtagtttgctaggattagcgattacagggaccaaattttaagcgacccttaattgcagggatgaaacactta 13384510  T
Q  219 ttaaa 223  Q
    |||||    
T  13384509 ttaaa 13384505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 18087719 - 18087763
Alignment:
Q  179 aatttttaaatgaaccttaattgcagggacgaaacacatattaaa 223  Q
    ||||||||||||| || |||||||| |||| ||||||||||||||    
T  18087719 aatttttaaatgacccctaattgcaaggactaaacacatattaaa 18087763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 18855517 - 18855413
Alignment:
Q  120 aaattttagatgattaaattttgtgagggtag-tttgtaggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacata 218  Q
    ||||||||  ||||||| |||||  ||||||| ||| |||||| |||| ||| |  ||| | ||||||||||| || || |||||||||||||| |||||    
T  18855517 aaattttaattgattaacttttgaaagggtagatttttaggattaacgattatagggaccattttttaaatgacccctatttgcagggacgaaaaacata 18855418  T
Q  219 ttaaa 223  Q
    |||||    
T  18855417 ttaaa 18855413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 20426637 - 20426681
Alignment:
Q  106 tgggatgggagactaaattttagatgattaaattttgtgagggta 150  Q
    ||||||| | |||||||||||| ||||||||| ||||||||||||    
T  20426637 tgggatgagggactaaattttaaatgattaaactttgtgagggta 20426681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 10203729 - 10203630
Alignment:
Q  119 taaattttagatgattaaattttgtgagggtagtttgt-aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    ||||||||| ||||||||||||| | ||| || ||||| || || |||| |||||  ||||||||||||||||| ||||||||  |||||||||||||||    
T  10203729 taaattttaaatgattaaattttataaggataatttgtcagaattaacgattacagtgactaatttttaaatgacccttaattatagggacgaaacacat 10203630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 30641625 - 30641523
Alignment:
Q  120 aaattttagatgattaaattttgtgagggtagtttgta-ggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacata 218  Q
    |||||||| ||||||||| ||||| | |||| |||| | |||| |||| |||||  ||| ||||||||||||| || |||||| ||||||||||||||||    
T  30641625 aaattttaaatgattaaactttgtaatggtaatttgcaaggattaacgattaca--gacaaatttttaaatgacccctaattggagggacgaaacacata 30641528  T
Q  219 ttaaa 223  Q
    |||||    
T  30641527 ttaaa 30641523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 29321286 - 29321330
Alignment:
Q  179 aatttttaaatgaaccttaattgcagggacgaaacacatattaaa 223  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||    
T  29321286 aatttttaaatgacccttaattgcaaggacgaaacacatattaaa 29321330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 30642527 - 30642571
Alignment:
Q  179 aatttttaaatgaaccttaattgcagggacgaaacacatattaaa 223  Q
    ||||||||||||| || ||||||||||||||||||||||||||||    
T  30642527 aatttttaaatgacccataattgcagggacgaaacacatattaaa 30642571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 32062696 - 32062592
Alignment:
Q  120 aaattttagatgattaaattttgtgagggtagtttgt-aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacata 218  Q
    |||||||| |||||||||||||   ||| || ||||| ||||| || | |||||  ||| ||||||||||||| || ||||| ||||||| |||||||||    
T  32062696 aaattttaaatgattaaattttacaaggctaatttgtcaggattaatgtttacaaggaccaatttttaaatgacccctaatttcagggaccaaacacata 32062597  T
Q  219 ttaaa 223  Q
    |||||    
T  32062596 ttaaa 32062592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 40388487 - 40388531
Alignment:
Q  179 aatttttaaatgaaccttaattgcagggacgaaacacatattaaa 223  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||    
T  40388487 aatttttaaatggcccttaattgcagggatgaaacacatattaaa 40388531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 41583612 - 41583656
Alignment:
Q  179 aatttttaaatgaaccttaattgcagggacgaaacacatattaaa 223  Q
    ||||||||||||| || |||||||||||| |||||||||||||||    
T  41583612 aatttttaaatgacccctaattgcagggatgaaacacatattaaa 41583656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 54858917 - 54858977
Alignment:
Q  157 aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    ||||| |||| |||||| |||||||||||||||||  | |||||||| |||||||||||||    
T  54858917 aggattaacgattacatggactaatttttaaatgacgcctaattgcaaggacgaaacacat 54858977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 11446317 - 11446274
Alignment:
Q  179 aatttttaaatgaaccttaattgcagggacgaaacacatattaa 222  Q
    ||||||||||||| |  |||||||||||||||||||||||||||    
T  11446317 aatttttaaatgacctctaattgcagggacgaaacacatattaa 11446274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 39701272 - 39701326
Alignment:
Q  163 aacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    |||| |||||| |||||||||||||||||  | |||||||| |||||||||||||    
T  39701272 aacgattacatagactaatttttaaatgacgcctaattgcaaggacgaaacacat 39701326  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 52573596 - 52573645
Alignment:
Q  168 ttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    |||||| |||||||||||||||||  | |||||||| |||||||||||||    
T  52573596 ttacatggactaatttttaaatgacgcctaattgcaaggacgaaacacat 52573645  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 11524018 - 11523958
Alignment:
Q  157 aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    ||||| |||| |||||  |||||||||||||||||  | |||||||| |||||||||||||    
T  11524018 aggattaacgattacagagactaatttttaaatgacgcctaattgcaaggacgaaacacat 11523958  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 32063717 - 32063761
Alignment:
Q  179 aatttttaaatgaaccttaattgcagggacgaaacacatattaaa 223  Q
    ||||||||||||| || ||||||||||||| ||| ||||||||||    
T  32063717 aatttttaaatgacccctaattgcagggacaaaatacatattaaa 32063761  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 40317044 - 40317088
Alignment:
Q  179 aatttttaaatgaaccttaattgcagggacgaaacacatattaaa 223  Q
    ||||||||||| | || ||| ||||||||||||||||||||||||    
T  40317044 aatttttaaataagccctaactgcagggacgaaacacatattaaa 40317088  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 40327118 - 40327162
Alignment:
Q  179 aatttttaaatgaaccttaattgcagggacgaaacacatattaaa 223  Q
    ||||||||||| | || ||| ||||||||||||||||||||||||    
T  40327118 aatttttaaataagccctaactgcagggacgaaacacatattaaa 40327162  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 40387514 - 40387470
Alignment:
Q  179 aatttttaaatgaaccttaattgcagggacgaaacacatattaaa 223  Q
    ||||||||||||  || |||||||||||| |||||||||||||||    
T  40387514 aatttttaaatggcccctaattgcagggatgaaacacatattaaa 40387470  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 41582494 - 41582450
Alignment:
Q  179 aatttttaaatgaaccttaattgcagggacgaaacacatattaaa 223  Q
    ||||||||||||| || | |||||||||| |||||||||||||||    
T  41582494 aatttttaaatgacccctgattgcagggatgaaacacatattaaa 41582450  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 32132411 - 32132307
Alignment:
Q  120 aaattttagatgattaaattttgtgagggtagtttgta-ggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacata 218  Q
    ||||||||  |||||||| ||||| || ||| |||| | |||| |||| |||||| ||| ||||||||||||| |  |||||| ||||||||||||||||    
T  32132411 aaattttaattgattaaactttgtaagagtaatttgcaaggattaacgattacatggacgaatttttaaatgaccactaattggagggacgaaacacata 32132312  T
Q  219 ttaaa 223  Q
    |||||    
T  32132311 ttaaa 32132307  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 35038525 - 35038464
Alignment:
Q  156 taggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    |||||| |||| |||||| ||  ||||||||||||| ||||||||||| |||||||||||||    
T  35038525 taggattaacgattacatggatcaatttttaaatgacccttaattgcaaggacgaaacacat 35038464  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 44522194 - 44522155
Alignment:
Q  179 aatttttaaatgaaccttaattgcagggacgaaacacata 218  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  44522194 aatttttaaatgatccctaattgcagggacgaaacacata 44522155  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 40714811 - 40714860
Alignment:
Q  168 ttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    |||||| |||||||||||||||||  | |||||||| |||||||||||||    
T  40714811 ttacatggactaatttttaaatgacgcctaattgcaaggacgaaacacat 40714860  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 40714513 - 40714453
Alignment:
Q  157 aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    ||||| |||| |||||  |||||||||||||||||  | |||||||| |||||||||||||    
T  40714513 aggattaacgattacagggactaatttttaaatgacgcctaattgcaaggacgaaacacat 40714453  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 49955704 - 49955764
Alignment:
Q  157 aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    ||||| |||| |||||  |||||||||||||||||  | |||||||| |||||||||||||    
T  49955704 aggattaacgattacaaagactaatttttaaatgacgcctaattgcaaggacgaaacacat 49955764  T

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Target: scaffold0771 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 978 - 929
Alignment:
Q  168 ttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    |||||| |||||||||||||||||  | |||||||| |||||||||||||    
T  978 ttacatggactaatttttaaatgatgcctaattgcaaggacgaaacacat 929  T

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Target: scaffold0388 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 12596 - 12656
Alignment:
Q  157 aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    ||||| |||| |||||  |||||||||||||||||  | |||||||| |||||||||||||    
T  12596 aggattaacgattacagggactaatttttaaatgacgcctaattgcaaggacgaaacacat 12656  T

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Target: scaffold0328 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 11497 - 11557
Alignment:
Q  157 aggatcaacggttacatcgactaatttttaaatgaaccttaattgcagggacgaaacacat 217  Q
    ||||| |||| |||||| |||||||||||||||||  | |||||||| ||| |||||||||    
T  11497 aggattaacgattacatggactaatttttaaatgacgcctaattgcaaggatgaaacacat 11557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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