View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3444_low_1 (Length: 584)
Name: NF3444_low_1
Description: NF3444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3444_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 183 - 561
Target Start/End: Complemental strand, 46932033 - 46931655
Alignment:
| Q |
183 |
tgatcaagatttaagaactaatttacatacaagttggagaattaccaccaccaagagattaaggatgatcatgatcttctttttcttgatttgggattat |
282 |
Q |
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| T |
46932033 |
tgatcaagatttaagaactaatttacatacaagttggataattaccaccaccaagagattaaggatgatcatgatcttctttttcttgatttgggattat |
46931934 |
T |
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| Q |
283 |
ttgatttatgtgttgaagaagcagcaactggtttaccaaacaaaccacaaaaaccacatgttgcaaccttaggagaaggtgggtcaattgatgttggtgc |
382 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46931933 |
ttgatttatgtgctgaagaagcagcaactggtttaccaaacaaaccacaaaaaccacatgttgcaaccttaggagaaggtgggtcaattgatgttggtgc |
46931834 |
T |
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| Q |
383 |
aacgttgaccgatcgatatggtcttgctccagctgatctgcttctctccaacgtgccagttgatgcactctcttgttctagttgattctgattcaaacca |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46931833 |
aacgttgaccgatcgatatggtcttgctccagctgatctgcttctctccaacgtaccagttgatgcactctcttgttctagttgattctgattcaaacca |
46931734 |
T |
|
| Q |
483 |
gacaagaatttatcatcccaaaccaatcctgatgaaccttgtctcctgaatgatgctaatgatttctgcagctcagcca |
561 |
Q |
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| T |
46931733 |
gacaagaatttatcatcccaaaccaatcctgatgaaccttgtctcctgaatgatgctaatgatttctgcagctcagcca |
46931655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 46932213 - 46932108
Alignment:
| Q |
17 |
agcttggaactctaaaccaaaatct--gagacaaaatttgagcaaaccttatttcacacggagatagtacatccatatgttctacgaatttacacaattt |
114 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46932213 |
agcttggaactctaaaccaaaatctttgagacaaaatttgagcaaaccttatttcacacggagatagtacatccatatgttctacgaatttacacaattt |
46932114 |
T |
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| Q |
115 |
aacacc |
120 |
Q |
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|||||| |
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| T |
46932113 |
aacacc |
46932108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 536
Target Start/End: Complemental strand, 44510360 - 44510317
Alignment:
| Q |
493 |
tatcatcccaaaccaatcctgatgaaccttgtctcctgaatgat |
536 |
Q |
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| T |
44510360 |
tatcatcccaaacaaaccctgatgaaccttgtcttctgaatgat |
44510317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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