View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3444_low_2 (Length: 552)
Name: NF3444_low_2
Description: NF3444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3444_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 12 - 534
Target Start/End: Complemental strand, 48397914 - 48397392
Alignment:
| Q |
12 |
agagaaagagccatggcagttgaagggtagaagacatatttagggacgttgaattctctagcgacgtcaaaagcgtctgtcccaaagaggtcgacgacaa |
111 |
Q |
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| T |
48397914 |
agagaaagagccatggcagttgaagggtagaagacatatttagggacgttgaattctctagcgacgtcaaaagcgtctgtcccaaagaggtcgacgacaa |
48397815 |
T |
|
| Q |
112 |
cagcagtgatagtatgagtttcagagagagtgttgaagttttgacggagagaagggagagaacggaggacagtgagggagatgattgtctctatcccgga |
211 |
Q |
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| T |
48397814 |
cagcagtgatagtatgagtttcagagagagtgttgaagttttgacggagagaagggagagaacggaggacagtgagggagatgattgtctctatcccgga |
48397715 |
T |
|
| Q |
212 |
gtttggtggaaggtctgagaaggaaactggtggaaggaaagtatgtgaaatggactttggtagagattgaagaactgttttttgagcttttgaaggtgga |
311 |
Q |
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| T |
48397714 |
gtttggtggaaggtctgagaaggaaactggtggaaggaaagtatgtgaaatgaactttggtagagattgaagaactgttttttgagcttttgaaggtgga |
48397615 |
T |
|
| Q |
312 |
ccttcggtgggaatgaagaaggagatttgaagattttgattaagaataataattcttttggcaaattcaatcattggtataagatgtcccatgcctggtg |
411 |
Q |
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| T |
48397614 |
ccttcggtgggaatgaagaaggtgatttgaagattttgattaagaataataattcttttggcaaattcaatcattggtataagatgtcccatgcctggtg |
48397515 |
T |
|
| Q |
412 |
atggtagcatcaccaccataggtggtggtttagataatggttcttgttttgagagttccatggaaatgaaaatggtgcgtttagtattttgggtgggtga |
511 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48397514 |
atggtagcataaccaccataggtggtggtttagataatggttcttgttttgagagttccatggaaatgaaaatgatgcgtttagtattttgggtgggtga |
48397415 |
T |
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| Q |
512 |
gaattgagaattgttgttgtaat |
534 |
Q |
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| T |
48397414 |
gaattgagaattgttgttgtaat |
48397392 |
T |
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