View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3444_low_4 (Length: 340)
Name: NF3444_low_4
Description: NF3444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3444_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 33082324 - 33082011
Alignment:
| Q |
20 |
agagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaacggaagaaaaggcagcagaaaaacgcagtgaaatgggaag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33082324 |
agagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaacggaagaaaaggcagcagaaaaacgcagtgaaatgggaag |
33082225 |
T |
|
| Q |
120 |
agagggttcaaacaagggatcagttgaaggcagagaaacaactaaaaaaggtcagcaaatatagctgagaagattaatgatgagaaactgaggaagattg |
219 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33082224 |
agagggttcaaacaagggatcagttgaagtccgagaaacaactaaaaaaggtcagcaaatatagctgagaagattaatgatgagaaactgaggaagattg |
33082125 |
T |
|
| Q |
220 |
caaagagagagaagaaactattatagcctggatttgaacgtcgtaaggaaggatttcttaatggtatttctggctaacttggctgtgaaatttattgata |
319 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33082124 |
caaagagagagaagaagctattatagcctggatttgaaggtcgtaaggaaggatttcttaatggtatttctggctaacttggctgtgaaatttattgatt |
33082025 |
T |
|
| Q |
320 |
ttgtgcctatgctt |
333 |
Q |
| |
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|||||||| ||||| |
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| T |
33082024 |
ttgtgcctttgctt |
33082011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 33092184 - 33091871
Alignment:
| Q |
20 |
agagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaacggaagaaaaggcagcagaaaaacgcagtgaaatgggaag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33092184 |
agagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaacggaagaaaaggcagcagaaaaacgcagtgaaatgggaag |
33092085 |
T |
|
| Q |
120 |
agagggttcaaacaagggatcagttgaaggcagagaaacaactaaaaaaggtcagcaaatatagctgagaagattaatgatgagaaactgaggaagattg |
219 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33092084 |
agagggttcaaacaagggatcagttgaagtccgagaaacaactaaaaaaggtcagcaaatatagctgagaagattaatgatgagaaactgaggaagattg |
33091985 |
T |
|
| Q |
220 |
caaagagagagaagaaactattatagcctggatttgaacgtcgtaaggaaggatttcttaatggtatttctggctaacttggctgtgaaatttattgata |
319 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33091984 |
caaagagagagaagaagctattatagcctggatttgaaggtcgtaaggaaggatttcttaatggtatttctggctaacttggctgtgaaatttattgatt |
33091885 |
T |
|
| Q |
320 |
ttgtgcctatgctt |
333 |
Q |
| |
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|||||||| ||||| |
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| T |
33091884 |
ttgtgcctttgctt |
33091871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 33099680 - 33099367
Alignment:
| Q |
20 |
agagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaacggaagaaaaggcagcagaaaaacgcagtgaaatgggaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33099680 |
agagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaacggaagaaaaggcagcagaaaaacgcagtgaaatgggaag |
33099581 |
T |
|
| Q |
120 |
agagggttcaaacaagggatcagttgaaggcagagaaacaactaaaaaaggtcagcaaatatagctgagaagattaatgatgagaaactgaggaagattg |
219 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33099580 |
agagggttcaaacaagggatcagttgaagtccgagaaacaactaaaaaaggtcagcaaatatagctgagaagattaatgatgagaaactgaggaagattg |
33099481 |
T |
|
| Q |
220 |
caaagagagagaagaaactattatagcctggatttgaacgtcgtaaggaaggatttcttaatggtatttctggctaacttggctgtgaaatttattgata |
319 |
Q |
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|
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33099480 |
caaagagagagaagaagctattatagcctggatttgaaggtcgtaaggaaggatttcttaatggtatttctggctaacttggctgtgaaatttattgatt |
33099381 |
T |
|
| Q |
320 |
ttgtgcctatgctt |
333 |
Q |
| |
|
|||||||| ||||| |
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| T |
33099380 |
ttgtgcctttgctt |
33099367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 20 - 285
Target Start/End: Complemental strand, 33072588 - 33072318
Alignment:
| Q |
20 |
agagcttcgggaattaaggttcatga-------tgatcctaaactgataaagagaagtatacagaaacggaagaaaaggcagcagaaaaacgcagtgaaa |
112 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||| |||||| || ||||| |||||| ||||||| ||||| || ||||| |||| |||| |
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| T |
33072588 |
agagcttcgggaattaaggttcatgaatcatgatgatcctaaattgataaggaaaagta--cagaaaaggaagaagaggcaacataaaaatgcagagaaa |
33072491 |
T |
|
| Q |
113 |
tgggaagagagggttcaaacaagggatcagttgaaggcagagaaacaactaaaaaaggtcagcaaatatagctgagaagattaatgatgagaaactgagg |
212 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||| ||||||||||| |
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| T |
33072490 |
tgggaagagagggttcaatcaagggatcagttgaaggcagagaaacaacaaaaaaaggtttgcaaatatagctgagaggattaatgataagaaactgagg |
33072391 |
T |
|
| Q |
213 |
aagattgcaaagagagagaagaaactattatagcctggatttgaacgtcgtaaggaaggatttcttaatggta |
285 |
Q |
| |
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||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| |||| |||||||| |
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| T |
33072390 |
aagattgcaaagagagagaagaagctattacggcctggatttgaaggtcgtaaggaaggttttcgtaatggta |
33072318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 297
Target Start/End: Complemental strand, 3931473 - 3931197
Alignment:
| Q |
20 |
agagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaacggaagaaaaggcagcagaaaaacgcagtgaaatgggaag |
119 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||||||||||| ||| ||||| || |||||| ||| | ||||| |||| ||||||||||| |
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| T |
3931473 |
agagcttcaggaattaaggtccatgatgatcccaaactgataaagaaaagcatacataaggtgaagaagcagcaagaaaaaaatgcagagaaatgggaag |
3931374 |
T |
|
| Q |
120 |
agagggttcaaacaagggatcagttgaaggcagagaaacaactaaaaaaggtcagcaaatatagctgagaagattaatgatgagaaactgaggaagattg |
219 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| ||| | |||||||||| ||||||||||||| |||||||||| ||||| |||||||||||| |
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| T |
3931373 |
agagagttcaatcaagggatcagttgaaggcagagaagcaaa-agaaaaggtcagataatatagctgagaggattaatgataagaaaatgaggaagattg |
3931275 |
T |
|
| Q |
220 |
caaagagagagaagaaactattatagcctggatttgaacgtcgtaaggaaggatttcttaatggtatttctggctaac |
297 |
Q |
| |
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||||||||||||| || |||||| ||| || |||||| |||| |||||||| ||| ||||| | | ||||||||||| |
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| T |
3931274 |
caaagagagagaaaaagctattacggccgggctttgaaggtcgcaaggaaggttttattaatagcagttctggctaac |
3931197 |
T |
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