View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3444_low_5 (Length: 325)
Name: NF3444_low_5
Description: NF3444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3444_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 26 - 308
Target Start/End: Original strand, 100816 - 101094
Alignment:
| Q |
26 |
aaaggtgtttaactttaatcaaatcaaattctaaaatcacacaaactactaattagtgagttttttatttgtggataataattttttacctaatgtataa |
125 |
Q |
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| T |
100816 |
aaaggtgtttaactttaatcaaatcaaattctaaaatcacacaaactactaattagtgagttttt-atttgtggataataattttttacctaatgtataa |
100914 |
T |
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| Q |
126 |
aagttaaactaataataatacatcatgttcatgtcaaaaaagaataagttaaactatttttgaacaggaaagaaaaagttaaactaatacagcatgtaac |
225 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
100915 |
aagttaaactaat---aatacatcatgttcatgtcaaaaaagaataagttaaactatttttgaacaggaaagaaaaagttaaactaatacagcatgtaac |
101011 |
T |
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| Q |
226 |
agttatctttcacaatgtggtcnnnnnnntctctttcacaaccgtcttacttaacctattaggtaactttaaaggtaacatat |
308 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
101012 |
agttatctttcacaatgtggtcaaaaaaatctctttcacaaccgtcttacttaacctattaggtaactttaaaggtaacatat |
101094 |
T |
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