View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3444_low_6 (Length: 317)

Name: NF3444_low_6
Description: NF3444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3444_low_6
NF3444_low_6
[»] chr4 (4 HSPs)
chr4 (13-190)||(18342811-18342988)
chr4 (78-190)||(48288755-48288862)
chr4 (238-293)||(31662928-31662983)
chr4 (251-291)||(6735013-6735053)
[»] chr2 (3 HSPs)
chr2 (13-190)||(36840584-36840761)
chr2 (187-293)||(31315424-31315530)
chr2 (238-293)||(31343043-31343098)
[»] scaffold0002 (1 HSPs)
scaffold0002 (13-190)||(164376-164553)
[»] chr6 (2 HSPs)
chr6 (13-190)||(14249173-14249350)
chr6 (191-285)||(31112861-31112955)
[»] chr3 (7 HSPs)
chr3 (187-300)||(19451686-19451799)
chr3 (13-124)||(46699127-46699238)
chr3 (187-293)||(5939253-5939360)
chr3 (187-293)||(2746467-2746573)
chr3 (187-293)||(18111843-18111949)
chr3 (214-291)||(28035096-28035174)
chr3 (187-271)||(5835883-5835967)
[»] scaffold1779 (1 HSPs)
scaffold1779 (16-157)||(732-873)
[»] chr7 (2 HSPs)
chr7 (187-293)||(34456035-34456141)
chr7 (187-291)||(3078313-3078418)
[»] chr8 (1 HSPs)
chr8 (187-293)||(25336887-25336994)
[»] chr1 (2 HSPs)
chr1 (187-291)||(15088881-15088986)
chr1 (187-291)||(22211489-22211594)
[»] scaffold0043 (1 HSPs)
scaffold0043 (257-293)||(69422-69458)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 18342988 - 18342811
Alignment:
Q  13 gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18342988 gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctga 18342889  T
Q  113 agtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataa 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18342888 agtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataa 18342811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 190
Target Start/End: Complemental strand, 48288862 - 48288755
Alignment:
Q  78 aaagcagtaccaaattcatctttagaaagatctgaagtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataa 177  Q
    |||| |||| ||||||||||||||||||||||||||||||| |||  |  |||| |||    ||||||||||||||||||| || ||| |||||||||||    
T  48288862 aaaggagtatcaaattcatctttagaaagatctgaagtgattaggagtc-aattatac----ttgtaaagaactaaaacgtggtgatgatataataataa 48288768  T
Q  178 agtatgatgataa 190  Q
    |||||||||||||    
T  48288767 agtatgatgataa 48288755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 31662983 - 31662928
Alignment:
Q  238 aatgacatagttcaaactacccaaaggaagagttaactaactaaggaactcacctt 293  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||    
T  31662983 aatgacatgattcaaactacccaaagggagagttaactaactaaggaactcacctt 31662928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 6735053 - 6735013
Alignment:
Q  251 aaactacccaaaggaagagttaactaactaaggaactcacc 291  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  6735053 aaactacccaaagggagagttaactaactaaggaactcacc 6735013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 178; Significance: 5e-96; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 36840761 - 36840584
Alignment:
Q  13 gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36840761 gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctga 36840662  T
Q  113 agtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataa 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36840661 agtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataa 36840584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 187 - 293
Target Start/End: Original strand, 31315424 - 31315530
Alignment:
Q  187 ataaccataaaaacctcgtttgtaccaagtaaaagtaaataacaaagtcaaaatgacatagttcaaactacccaaaggaagagttaactaactaaggaac 286  Q
    |||||||| ||||||||| |||||   |||||||||||||| ||   |   ||||||||  ||||||||||||||||| |||||||||||||||||||||    
T  31315424 ataaccattaaaacctcgattgtattgagtaaaagtaaatagcaccatttcaatgacatgattcaaactacccaaagggagagttaactaactaaggaac 31315523  T
Q  287 tcacctt 293  Q
    |||||||    
T  31315524 tcacctt 31315530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 31343098 - 31343043
Alignment:
Q  238 aatgacatagttcaaactacccaaaggaagagttaactaactaaggaactcacctt 293  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||    
T  31343098 aatgacatgattcaaactacccaaagggagagttaactaactaaggaactcacctt 31343043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 164376 - 164553
Alignment:
Q  13 gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctga 112  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||    
T  164376 gaatcataggagctagtaatcaacggtatgcttatattggtgacattgttgttgatgtaatcaaaaaagcagtatcaaattcatctttagaaatatctga 164475  T
Q  113 agtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataa 190  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  164476 agtgatcagggttgtaactgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataa 164553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 14249350 - 14249173
Alignment:
Q  13 gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctga 112  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||    
T  14249350 gaatcataggagctagtaatcaacggtatgcttatattggtgacattgttgttgatgtaatcaaaaaagcagtatcaaattcatctttagaaatatctga 14249251  T
Q  113 agtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataa 190  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14249250 agtgatcagggttgtaactgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataa 14249173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 191 - 285
Target Start/End: Complemental strand, 31112955 - 31112861
Alignment:
Q  191 ccataaaaacctcgtttgtaccaagtaaaagtaaataacaaagtcaaaatgacatagttcaaactacccaaaggaagagttaactaactaaggaa 285  Q
    |||| |||||||| ||||||| |||||||||||||||||| | |   ||||||||  ||||||||||||||||  ||||||||||||||||||||    
T  31112955 ccattaaaacctcatttgtactaagtaaaagtaaataacacaatttcaatgacatgattcaaactacccaaagagagagttaactaactaaggaa 31112861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 187 - 300
Target Start/End: Original strand, 19451686 - 19451799
Alignment:
Q  187 ataaccataaaaacctcgtttgtaccaagtaaaagtaaataacaaagtcaaaatgacatagttcaaactacccaaaggaagagttaactaactaaggaac 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19451686 ataaccataaaaacctcgtttgtaccaagtaaaagtaaataacaaagtcaaaatgacatagttcaaactaccgaaaggaagagttaactaactaaggaac 19451785  T
Q  287 tcacctttaatcct 300  Q
    ||||||||||||||    
T  19451786 tcacctttaatcct 19451799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 46699238 - 46699127
Alignment:
Q  13 gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46699238 gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaataaaaaaagcagtaccaaattcatctttagaaagatctga 46699139  T
Q  113 agtgatcagggc 124  Q
    ||||||||||||    
T  46699138 agtgatcagggc 46699127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 293
Target Start/End: Original strand, 5939253 - 5939360
Alignment:
Q  187 ataaccataaaaacctcgtttgtaccaagtaaaagtaaataacaaagtcaaaatgacatagttcaaactacccaaaggaagagttaactaact-aaggaa 285  Q
    |||||||| |||||||||||| ||   ||||||||||||||||| | |   ||||||||| ||||||||||||||||| |||||||||||||| ||||||    
T  5939253 ataaccattaaaacctcgtttatattgagtaaaagtaaataacacaattttaatgacataattcaaactacccaaagggagagttaactaactaaaggaa 5939352  T
Q  286 ctcacctt 293  Q
    || |||||    
T  5939353 cttacctt 5939360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 187 - 293
Target Start/End: Complemental strand, 2746573 - 2746467
Alignment:
Q  187 ataaccataaaaacctcgtttgtaccaagtaaaagtaaataacaaagtcaaaatgacatagttcaaactacccaaaggaagagttaactaactaaggaac 286  Q
    |||||||| ||||||||| |||||   |||||||||||||| ||   |   ||||||||  ||||||||||||||||| |||||||||||||||||||||    
T  2746573 ataaccattaaaacctcgattgtattgagtaaaagtaaatagcaccatttcaatgacatgattcaaactacccaaagggagagttaactaactaaggaac 2746474  T
Q  287 tcacctt 293  Q
    |||||||    
T  2746473 tcacctt 2746467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 293
Target Start/End: Original strand, 18111843 - 18111949
Alignment:
Q  187 ataaccataaaaacctcgtttgtaccaagtaaaagtaaataacaaagtcaaaatgacatagttcaaactacccaaaggaagagttaactaactaaggaac 286  Q
    |||||||| ||||||||| |||||   |||||||||||||| ||   |   ||||||||  ||||||||| ||||||| |||||||||||||||||||||    
T  18111843 ataaccattaaaacctcgattgtattgagtaaaagtaaatagcaccatttcaatgacatgattcaaactatccaaagggagagttaactaactaaggaac 18111942  T
Q  287 tcacctt 293  Q
    |||||||    
T  18111943 tcacctt 18111949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 291
Target Start/End: Original strand, 28035096 - 28035174
Alignment:
Q  214 agtaaaagtaaataacaaagtcaaaatgacatagttcaaactacccaaaggaagagttaactaact-aaggaactcacc 291  Q
    ||||||||||||||||| | |   ||||||||  ||||||||||||||||| |||||||||||||| ||||||||||||    
T  28035096 agtaaaagtaaataacacaattttaatgacatgattcaaactacccaaagggagagttaactaactaaaggaactcacc 28035174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 5835883 - 5835967
Alignment:
Q  187 ataaccataaaaacctcgtttgtaccaagtaaaagtaaataacaaagtcaaaatgacatagttcaaactacccaaaggaagagtt 271  Q
    |||||||| |||||| ||||| ||   ||||||||||||||||| | |   ||| ||||| ||||||||||||||||| ||||||    
T  5835883 ataaccattaaaaccccgtttatattgagtaaaagtaaataacacaattttaataacataattcaaactacccaaagggagagtt 5835967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1779 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold1779
Description:

Target: scaffold1779; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 732 - 873
Alignment:
Q  16 tcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagt 115  Q
    ||||||||||||||||||| || |||||| ||||||||||| || |||||||||| |||||  |||||||||||||| || || |||||||||| |||||    
T  732 tcataggagctagtaatcgccgatatgctcatattggtgacgttattgttgctgtgatcaaggaagcagtaccaaatacacctctagaaagatcagaagt 831  T
Q  116 gatcagggctgtaattgtacgtacttgtaaagaactaaaacg 157  Q
    |||||| ||||||||||||||||||||||||||||| |||||    
T  832 gatcagagctgtaattgtacgtacttgtaaagaactcaaacg 873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 187 - 293
Target Start/End: Complemental strand, 34456141 - 34456035
Alignment:
Q  187 ataaccataaaaacctcgtttgtaccaagtaaaagtaaataacaaagtcaaaatgacatagttcaaactacccaaaggaagagttaactaactaaggaac 286  Q
    |||||||| ||||||||| |||||   |||||||||||||||||   |   ||||||||  ||||||||||||||||| |||| ||||||||||||||||    
T  34456141 ataaccattaaaacctcgattgtattgagtaaaagtaaataacatcatttcaatgacatgattcaaactacccaaagggagagctaactaactaaggaac 34456042  T
Q  287 tcacctt 293  Q
    |||||||    
T  34456041 tcacctt 34456035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 291
Target Start/End: Complemental strand, 3078418 - 3078313
Alignment:
Q  187 ataaccataaaaacctcgtttgtaccaagtaaaagtaaataacaaagtcaaaatgacatagttcaaactacccaaaggaagagttaactaact-aaggaa 285  Q
    |||||||| |||| ||| ||||||   ||||||||||||||||| | |   ||||||||  |||||||||| |||||| | |||||||||||| ||||||    
T  3078418 ataaccattaaaatctcttttgtattgagtaaaagtaaataacacaatttgaatgacatgattcaaactactcaaagggacagttaactaactaaaggaa 3078319  T
Q  286 ctcacc 291  Q
    ||||||    
T  3078318 ctcacc 3078313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 293
Target Start/End: Original strand, 25336887 - 25336994
Alignment:
Q  187 ataaccataaaaacctcgtttgtaccaagtaaaagtaaataacaaagtcaaaatgacatagttcaaactacccaaaggaagagttaactaact-aaggaa 285  Q
    |||||||| ||||| |||||| ||   ||||||||||||||||| | |   || |||||  ||||||||||||||||| |||||||||||||| ||||||    
T  25336887 ataaccattaaaacgtcgtttatattgagtaaaagtaaataacacaatattaacgacatgattcaaactacccaaagggagagttaactaactaaaggaa 25336986  T
Q  286 ctcacctt 293  Q
    ||||||||    
T  25336987 ctcacctt 25336994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 291
Target Start/End: Original strand, 15088881 - 15088986
Alignment:
Q  187 ataaccataaaaacctcgtttgtaccaagtaaaagtaaataacaaagtcaaaatgacatagttcaaactacccaaaggaagagttaactaact-aaggaa 285  Q
    |||||||| |||| ||||||||||   ||||||||||||||||| | |   ||||||||  |||||||||  |||||| |||||||||||||| ||||||    
T  15088881 ataaccattaaaatctcgtttgtattgagtaaaagtaaataacacaattttaatgacatgattcaaactattcaaagggagagttaactaactaaaggaa 15088980  T
Q  286 ctcacc 291  Q
    ||||||    
T  15088981 ctcacc 15088986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 291
Target Start/End: Original strand, 22211489 - 22211594
Alignment:
Q  187 ataaccataaaaacctcgtttgtaccaagtaaaagtaaataacaaagtcaaaatgacatagttcaaactacccaaaggaagagttaactaact-aaggaa 285  Q
    |||||||| |||| ||||||||||   ||||||||||||||||| | |   ||||||||  |||||||||  |||||| |||||||||||||| ||||||    
T  22211489 ataaccattaaaatctcgtttgtattgagtaaaagtaaataacacaattttaatgacatgattcaaactattcaaagggagagttaactaactaaaggaa 22211588  T
Q  286 ctcacc 291  Q
    ||||||    
T  22211589 ctcacc 22211594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 69458 - 69422
Alignment:
Q  257 cccaaaggaagagttaactaactaaggaactcacctt 293  Q
    |||||||| |||||||||||||||||||||| |||||    
T  69458 cccaaagggagagttaactaactaaggaacttacctt 69422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University