View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3444_low_9 (Length: 238)
Name: NF3444_low_9
Description: NF3444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3444_low_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 41638055 - 41638277
Alignment:
| Q |
16 |
tgatggtcaaaccaaactttgctggacgatcaaccacctaattggcttctctgagccaatgatttcaaacaaccaaacctgagttgcgatggatttgatg |
115 |
Q |
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| T |
41638055 |
tgatggtcaaaccaaactttgctggacgatcaaccacctaattggcttctctgagccaatgatttcaaacaaccaaacctgagttgcgatggatttgatg |
41638154 |
T |
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| Q |
116 |
aatattttccaccaacatatgtaggggatgaggatgagttggtggacaaccatctttaaccaactttaattctacagaatccaggactccgtgcagtctt |
215 |
Q |
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| T |
41638155 |
aatattttccaccaacatatgtaggggatgaggatgagttggtggacaaccatctttaaccaactttaattctacagaatccaggactccgtgcagtctt |
41638254 |
T |
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| Q |
216 |
aagcactgaacaagtatgaatac |
238 |
Q |
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| T |
41638255 |
aagcactgaacaagtatgaatac |
41638277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 42807159 - 42807286
Alignment:
| Q |
18 |
atggtcaaaccaaactttgctggacgatcaaccacctaattggcttctctgagccaatgatttcaaacaaccaaacctgagttgcgatggatttgatgaa |
117 |
Q |
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||||||||||||||||||||| || ||||||||||||| ||| |||||| || | |||||| ||||| ||||||||| |||||| |||||||||||||| |
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| T |
42807159 |
atggtcaaaccaaactttgctacac-atcaaccacctaaatggtttctct-aggctatgattccaaacgaccaaacctaagttgcaatggatttgatgaa |
42807256 |
T |
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| Q |
118 |
tattttccaccaacatatgtaggggatgag |
147 |
Q |
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| T |
42807257 |
tattttccactaatgtatgttggggatgag |
42807286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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