View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3445-Insertion-1 (Length: 1021)
Name: NF3445-Insertion-1
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3445-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 548; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 8 - 675
Target Start/End: Original strand, 52593596 - 52594283
Alignment:
| Q |
8 |
accttatcattggaagaacggtaccaaccaattaaataatattaactcctttacttgcttaacaccaactactactgctagttatttattggtaaaaagg |
107 |
Q |
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| T |
52593596 |
accttatcattggaagaacggtaccaaccaattaaataatattaactcctttacttgcttaacaccaactactactgctagttatttattggtaaaaagg |
52593695 |
T |
|
| Q |
108 |
aataaataattggtaaatttaagcgccaatcattattaagtttatcacgtgtgggaaagcgtgtgtgtgggttgtgttgcttgcttgaaattaagggttc |
207 |
Q |
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| T |
52593696 |
aataaataattggtaaatttaagcgccaatcattattaagtttatcacgtgtgggaaagcgtgtgtgtgggttgtgttgcttgcttgaaattaagggttc |
52593795 |
T |
|
| Q |
208 |
aaaggctaaccaccagttggtggacctgtgacttgtaacccttcttaaacaccaactttaaaccattaagcattcaataatcttcatattctcaaccaac |
307 |
Q |
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| T |
52593796 |
aaaggctaaccaccagttggtggacctgtgacttgtaacccttcttaaacaccaactttaaaccattaagcattcaataatcttcatattctcaaccaac |
52593895 |
T |
|
| Q |
308 |
taggattggtctgactttagatcttgaagtgtgtttttctcaaaatattctttccgatgtcaactatgttcta----------------------gatta |
385 |
Q |
| |
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|||| |||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
52593896 |
tagggttggtctgacttgagatcttgaagtgtatttttctcgaaatattctttccgatgtcaactatgttctagatctaaatggaatcacgctgggatta |
52593995 |
T |
|
| Q |
386 |
aactcatcgaattaatcaatcgactcttgagttggataccgagtttttnnnnnnntaataatcctcatattctgtttctttcctaatggtaattgcggtt |
485 |
Q |
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| T |
52593996 |
aactcatcgaatt----aatcgactcttgagttggataccgagttttaaaaaaaataataatcctcatattctgtttctttcctaatggtaattgcggtt |
52594091 |
T |
|
| Q |
486 |
ggctggattctctatacggagttggtgaaagtgacaaattcacgc--gtcagacggtttcctgttttgtatcgcaactgcaaatgactacgttcgttccc |
583 |
Q |
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| T |
52594092 |
ggctggattctctatacggagttggtgaaagtgacaaattcacgcgagtcagacggtttcctgttttgtatcgcaactgcaaatgactacgttcgttccc |
52594191 |
T |
|
| Q |
584 |
ttatactaccagcagcaggttatgtgctcatccatacacaatctactcttcatgacattttctattcattccaatggtgggtgggacctctc |
675 |
Q |
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| T |
52594192 |
ttatactaccagcagcaggttatgtgctcatccatacacaatctactcttcatgacattttctatccattccaatggtgggtgggacctctc |
52594283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 734 - 979
Target Start/End: Original strand, 52594334 - 52594584
Alignment:
| Q |
734 |
ctaaacaaaaccgacgcttgtattgttactttcaaacttaacttaaacctcaagtaaacactaaacagccactttcgtccttgaaaatgataagaggtat |
833 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52594334 |
ctaaacaaaaccgacgcttgtattgttactttgaaacttaacttaaacctcaagtaaacactaaacagccactttcgtccttgaaaatgataagaggtat |
52594433 |
T |
|
| Q |
834 |
caaaaaggctccctatcnnnnnnnnnnnntacttataaactcctcaaatttagcttttgt--gggatattggttgagacgttaaaatagtgt--attc-a |
928 |
Q |
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| T |
52594434 |
caaaaaggctccctatcaaaaataaaaaatacttataagctcctcaaatttagcttttgttgggtatattggttgagacgttaaaatagtgttaattcaa |
52594533 |
T |
|
| Q |
929 |
ggtcaaatattttgtaccaaacaacatgcatatgccgc-agtttccattgta |
979 |
Q |
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| T |
52594534 |
ggtcaaatatttgttaccaaac-acatgcatatgccgcaagtttccattgta |
52594584 |
T |
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