View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3445-Insertion-10 (Length: 591)
Name: NF3445-Insertion-10
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3445-Insertion-10 |
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| [»] scaffold0038 (2 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 8 - 400
Target Start/End: Original strand, 28152305 - 28152697
Alignment:
| Q |
8 |
agcacgagacaaacaatttctttctggtttcataacaagctcccttccattgctctcttctgtactactggccataaatataacacaaactttacatcta |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28152305 |
agcacgagacaaacaatttctttctggtttcataacaagctcccttccattgctctcttctgtactactggccataaatataacacaaacttttcatcta |
28152404 |
T |
|
| Q |
108 |
ttttctccattttcaaaatattcctcaatggcattgaatgcgctcttgactgtccatctcatcctccttatttcactatagaacccgatcatacatatct |
207 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28152405 |
ttttctccatttttaaaatattcctcaatggcattgaatgcgctcttgactgtccatctcatcctccttatttcactatagaacccgatcatacatatct |
28152504 |
T |
|
| Q |
208 |
attttgtttgccactacaagacatggtaagaatggatgaagtacttttaaaaagtgaatggaaccatgcggtggttaggtatgatttttcgatcatgcca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28152505 |
attttgtttgccactacaagacatggtaagaatggatgaagtacttttaaaaagtgaatggaaccatgcggtggttaggtatgatttttcgatcatgcca |
28152604 |
T |
|
| Q |
308 |
tttgaccttaaggaaagtcgaatgcacatattcaaacaagaaagcagcatggaggatattcagttcaccaatccttataaaaagaaagaatta |
400 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28152605 |
tttgaccttaaggaaagtcgaatgcatatattcaaacaagaaagcagcatggaggatattcagttcaccaatccttataaaaagcaagaatta |
28152697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 436 - 591
Target Start/End: Original strand, 28152739 - 28152894
Alignment:
| Q |
436 |
cgactaactaccattcagaaaagttcaggccaatcatagaactacccattggtgcaaaagcatatactcatggacatgcaagttttgacagaatttgtgt |
535 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28152739 |
cgactaactaccattcaaaaaagttcaggccaatcatagaactacccattggtgcaaaagcatatactcatggacatgcaagttttgacagaatttgtgt |
28152838 |
T |
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| Q |
536 |
aatagaaacaatgaatggaattattgtcatgcctatgaaagtgttaatgtacagtt |
591 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28152839 |
aatagaaacaatgaatggaattattgtcatgcctatgaaagtgttaatgtacagtt |
28152894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 21 - 400
Target Start/End: Complemental strand, 28095481 - 28095102
Alignment:
| Q |
21 |
caatttctttctggtttcataacaagctcccttccattgctctcttctgtactactggccataaatataacacaaactttacatctattttctccatttt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||| || | ||| ||||||||||||||||| |||| |
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| T |
28095481 |
caatttctttctggtttcataacaagctcccttccatttctctcttctgtactattggatgtaaataccacccgaacgttacatctattttctccttttt |
28095382 |
T |
|
| Q |
121 |
caaaatattcctcaatggcattgaatgcgctcttgactgtccatctcatcctccttatttcactatagaacccgatcatacatatctattttgtttgcca |
220 |
Q |
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||||||| | |||||||| ||||||| || ||| ||||| || || ||||||| | | || ||| || |||||||||||||| || ||||| | |
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| T |
28095381 |
caaaataaccatcaatggctatgaatgctttcgtgaaggtccaactaattttccttatattaaaattgaagccaatcatacatatctagttggtttgaaa |
28095282 |
T |
|
| Q |
221 |
ctacaagacatggtaagaatggatgaagtacttttaaaaagtgaatggaaccatgcggtggttaggtatgatttttcgatcatgccatttgaccttaagg |
320 |
Q |
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|||| |||| ||| ||| ||| ||||| | |||||||||| |||||||||||||||||||||| | |||| |||| | |||||||||||||||||| |
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| T |
28095281 |
ctactagacctggacagattgggtgaagcatttttaaaaagggaatggaaccatgcggtggttacatgtgatatttcaactgtgccatttgaccttaagg |
28095182 |
T |
|
| Q |
321 |
aaagtcgaatgcacatattcaaacaagaaagcagcatggaggatattcagttcaccaatccttataaaaagaaagaatta |
400 |
Q |
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||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
28095181 |
aaagtcgaatgcacatatttaaacaagaaagtagaatggaggatattcagttcaccaatcattataaaaagagagaatta |
28095102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 185 - 392
Target Start/End: Complemental strand, 26340373 - 26340166
Alignment:
| Q |
185 |
atagaacccgatcatacatatctattttgtttgccactacaagacatggtaagaatggatgaagtacttttaaaaagtgaatggaaccatgcggtggtta |
284 |
Q |
| |
|
||||||| |||| |||||||| | || ||||| |||||| | || |||| || || |||||| | |||| || | ||||||||||||||||| ||||| |
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| T |
26340373 |
atagaacgagatcgtacatatccaattgatttgcaactacatggcagggtaggattgtatgaagcaattttcaagattgaatggaaccatgcggaggtta |
26340274 |
T |
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| Q |
285 |
ggtatgatttttcgatcatgccatttgac-cttaaggaaagtcgaatgcacatattcaaacaagaaagcagcatggaggatattcagttcaccaatcctt |
383 |
Q |
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|| ||||||||||||||||||||| || ||||||||| ||||||||||||||||||||| ||| | ||||| ||| ||||||| |||||||||||| |
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| T |
26340273 |
cataagatttttcgatcatgccatttcacttttaaggaaactcgaatgcacatattcaaacaggaatgtagcatagagaatattca-atcaccaatcctt |
26340175 |
T |
|
| Q |
384 |
ataaaaaga |
392 |
Q |
| |
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|||||||| |
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| T |
26340174 |
ttaaaaaga |
26340166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 28239469 - 28239519
Alignment:
| Q |
15 |
gacaaacaatttctttctggtttcataacaagctcccttccattgctctct |
65 |
Q |
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|||| ||||||||||| ||||||| |||||||||||||||||| ||||||| |
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| T |
28239469 |
gacatacaatttctttttggtttcgtaacaagctcccttccatggctctct |
28239519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 28246447 - 28246497
Alignment:
| Q |
15 |
gacaaacaatttctttctggtttcataacaagctcccttccattgctctct |
65 |
Q |
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|
|||| ||||||||||| ||||||| |||||||||||||||||| ||||||| |
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| T |
28246447 |
gacatacaatttctttttggtttcgtaacaagctcccttccatggctctct |
28246497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 28525317 - 28525367
Alignment:
| Q |
15 |
gacaaacaatttctttctggtttcataacaagctcccttccattgctctct |
65 |
Q |
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|
|||| ||||||||||| ||||||| |||||| ||||||||||||||||||| |
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| T |
28525317 |
gacatacaatttctttttggtttcgtaacaacctcccttccattgctctct |
28525367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 39631 - 39681
Alignment:
| Q |
15 |
gacaaacaatttctttctggtttcataacaagctcccttccattgctctct |
65 |
Q |
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|||| ||||||||||| ||||||| |||||||||||||||||| ||||||| |
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| T |
39631 |
gacatacaatttctttttggtttcgtaacaagctcccttccatggctctct |
39681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 46609 - 46659
Alignment:
| Q |
15 |
gacaaacaatttctttctggtttcataacaagctcccttccattgctctct |
65 |
Q |
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|
|||| ||||||||||| ||||||| |||||||||||||||||| ||||||| |
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| T |
46609 |
gacatacaatttctttttggtttcgtaacaagctcccttccatggctctct |
46659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 499
Target Start/End: Complemental strand, 54829 - 54775
Alignment:
| Q |
445 |
accattcagaaaagttcaggccaatcatagaactacccattggtgcaaaagcata |
499 |
Q |
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|||||||| || ||||||||||||||| | || ||||||||||||||||||||| |
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| T |
54829 |
accattcacaatagttcaggccaatcacaagaccacccattggtgcaaaagcata |
54775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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