View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3445-Insertion-13 (Length: 408)
Name: NF3445-Insertion-13
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3445-Insertion-13 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 8 - 408
Target Start/End: Complemental strand, 41036011 - 41035611
Alignment:
| Q |
8 |
catagtcttcacaaattctatgtctgattattcaggccatttatagaggtttacgaaggttggcctaattggaataccattgttggtattgacagaattg |
107 |
Q |
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| T |
41036011 |
catagtcttcacaaattctacgtctgattattcaggccatttatagaggtttacgaaggttggcctaattggaataccattgttggtattgacagaattg |
41035912 |
T |
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| Q |
108 |
gatatgcaaacagaagccatggaatttgtgaaggattccaattcaagagcataattcactaagtagttgcactgcttgacagtgtaagagaggcatggaa |
207 |
Q |
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| T |
41035911 |
gatatgcaaacagaagccatggaacttgtgaaggattccaattcaagagcataattcactaaatagttgcactgcttgatagtgtaagagaggcatggaa |
41035812 |
T |
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| Q |
208 |
aattttcatgtgagactattatataacctaaatcttattcatcagagaaatatatatagtctgattgtgtgtattaaataattgtgaggggatgtgacac |
307 |
Q |
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| T |
41035811 |
aattttcatgtgaggctattatataacctaaatcttattcatcagagaaatatatatagtctgattgtgtgtattaaataagtgtgaggggatgtgacat |
41035712 |
T |
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| Q |
308 |
aatcagttttttaaataaattcaatgacatgtaaaattaattttaacattgcggagagtcctatctatcttacagcatatgcattatcacgctcttttgt |
407 |
Q |
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| T |
41035711 |
aatcaattttttaaataaattcaatgacatgtaaaattaattttaacattgcggagagtcctatctatattacagcatatgcattatcacgctcttttgt |
41035612 |
T |
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| Q |
408 |
a |
408 |
Q |
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| T |
41035611 |
a |
41035611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 41030409 - 41030283
Alignment:
| Q |
8 |
catagtcttcacaaattctatgtctgattattcaggccatttatagaggtttacgaaggttggcctaattggaataccattgttggtattgacagaattg |
107 |
Q |
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| T |
41030409 |
catagtcttcacaaattctacttctgattct---ggccacttgtagaggtttgtgaagtttggtctaatcggaata--att-ttgttattaacagaattg |
41030316 |
T |
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| Q |
108 |
gatatgcaaacagaagccatggaatttgtgaag |
140 |
Q |
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| T |
41030315 |
gatatgcaaacagaggccatggaatttgtgaag |
41030283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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