View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3445-Insertion-14 (Length: 287)

Name: NF3445-Insertion-14
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3445-Insertion-14
NF3445-Insertion-14
[»] chr7 (1 HSPs)
chr7 (8-284)||(26451158-26451434)
[»] chr8 (2 HSPs)
chr8 (8-61)||(28350704-28350757)
chr8 (19-61)||(29185684-29185726)
[»] chr5 (2 HSPs)
chr5 (8-61)||(25214555-25214608)
chr5 (8-61)||(25278705-25278758)
[»] chr2 (1 HSPs)
chr2 (19-63)||(17319633-17319677)
[»] chr3 (2 HSPs)
chr3 (20-63)||(27547205-27547248)
chr3 (19-61)||(27543793-27543835)
[»] scaffold0505 (1 HSPs)
scaffold0505 (19-61)||(9219-9261)
[»] chr1 (1 HSPs)
chr1 (26-63)||(16168760-16168797)


Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 284
Target Start/End: Complemental strand, 26451434 - 26451158
Alignment:
Q  8 tatagaacttagaagattaagaatggacattcaccaactttattattcataacacttttttcattaaataaagtgagaataatagttctccaacgttata 107  Q
    ||||||||||  ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26451434 tatagaacttgaaagatcaaaaatggacattcaccaactttattattcataacacttttttcattaaataaagtgagaataatagttctccaacgttata 26451335  T
Q  108 tgacagaacatgtgaatgtaaaccagacactatttatgaagttaatcaatcttaccaaaaatgattaagaataactgacttgttatggtgacaattgaaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26451334 tgacagaacatgtgaatgtaaaccagacactatttatgaagttaatcaatcttaccaaaaattattaagaataactgacttgttatggtgacaattgaaa 26451235  T
Q  208 cattaagatcccttaagttcatttgttaactagtttaggttctcggattattcaaacatttgaaaatctagacacct 284  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  26451234 cattaagatcccttaaattcatttgttaactagtttaggttctcggattattcaaacatttgaaaacctagaaacct 26451158  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 28350704 - 28350757
Alignment:
Q  8 tatagaacttagaagattaagaatggacattcaccaactttattattcataaca 61  Q
    |||||||||| |||||| |||||||||||||||| |||||||||||||||||||    
T  28350704 tatagaacttggaagatcaagaatggacattcactaactttattattcataaca 28350757  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 29185684 - 29185726
Alignment:
Q  19 gaagattaagaatggacattcaccaactttattattcataaca 61  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  29185684 gaagatcaagaatggacatccaccaactttattattcataaca 29185726  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 25214555 - 25214608
Alignment:
Q  8 tatagaacttagaagattaagaatggacattcaccaactttattattcataaca 61  Q
    |||||||||| |||||| |||||||||||| ||| |||||||||||||||||||    
T  25214555 tatagaacttggaagatcaagaatggacatccactaactttattattcataaca 25214608  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 25278705 - 25278758
Alignment:
Q  8 tatagaacttagaagattaagaatggacattcaccaactttattattcataaca 61  Q
    |||||||||| |||||| |||||||||||| ||| |||||||||||||||||||    
T  25278705 tatagaacttggaagatcaagaatggacatccactaactttattattcataaca 25278758  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 17319633 - 17319677
Alignment:
Q  19 gaagattaagaatggacattcaccaactttattattcataacact 63  Q
    |||||| |||||||||||| ||||||| |||||||||||||||||    
T  17319633 gaagatcaagaatggacatccaccaacattattattcataacact 17319677  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 27547248 - 27547205
Alignment:
Q  20 aagattaagaatggacattcaccaactttattattcataacact 63  Q
    ||||| || ||||||||| |||||||||||||||||||||||||    
T  27547248 aagatcaataatggacatccaccaactttattattcataacact 27547205  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 27543835 - 27543793
Alignment:
Q  19 gaagattaagaatggacattcaccaactttattattcataaca 61  Q
    |||||| || ||||||||| |||||||||||||||||||||||    
T  27543835 gaagataaaaaatggacatccaccaactttattattcataaca 27543793  T

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Target: scaffold0505 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 9261 - 9219
Alignment:
Q  19 gaagattaagaatggacattcaccaactttattattcataaca 61  Q
    |||||| |||||||||||| ||||||| |||||||||||||||    
T  9261 gaagatcaagaatggacatccaccaacattattattcataaca 9219  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 16168797 - 16168760
Alignment:
Q  26 aagaatggacattcaccaactttattattcataacact 63  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  16168797 aagaatagacattcaccaacattattattcataacact 16168760  T

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