View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3445-Insertion-15 (Length: 287)
Name: NF3445-Insertion-15
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3445-Insertion-15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 7 - 287
Target Start/End: Complemental strand, 44358408 - 44358125
Alignment:
| Q |
7 |
aactcccccaataagcctgccatgtggacagagaattggacatctttgtaa----gttcatgaattacaaccttata-ttttttgaggnnnnnnn-cgtt |
100 |
Q |
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| T |
44358408 |
aactcccccaataagcctgccatgtggacagagaattggacatctttgtaattaagttcatgaattacaaccttataattttttgaggaaaaaaaacgtt |
44358309 |
T |
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| Q |
101 |
tatgatctcaacataattaactacttgcnnnnnnnnnnnnnnnnacttctggttcaagctatcaagtatacggtggagtgccatatatacgctctgctga |
200 |
Q |
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| T |
44358308 |
tatgatctcaacataattaactactttcttttttttttttt---acttctgtttcaagctatcaagtatacggtggagtgccatatatacgctctgctga |
44358212 |
T |
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| Q |
201 |
agacattgcatttcatgtcactctttttgttgcaagaaatgggagctttgtcaactactatatggtactattcttcatttaagctta |
287 |
Q |
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| T |
44358211 |
agacattgcatttcatgtcactctttttgttgcaagaaatggaagctttgtcaactactatatggtactattcttcatttaagctta |
44358125 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 39476407 - 39476340
Alignment:
| Q |
172 |
ggtggagtgccatatatacgctctgctgaagacattgcatttcatgtcactctttttgttgcaagaaa |
239 |
Q |
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| T |
39476407 |
ggtggagagccatatataagatctgccaaagacactgcattccatgtcactcttttcattgcaagaaa |
39476340 |
T |
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