View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3445-Insertion-16 (Length: 263)
Name: NF3445-Insertion-16
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3445-Insertion-16 |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 95 - 255
Target Start/End: Original strand, 31429342 - 31429503
Alignment:
| Q |
95 |
caaggatcaagagtctcgtagacacgtgtttcttacgggattccttccctcaaaatccaaagtttcttcatttagattcatttttaatttttcatagtct |
194 |
Q |
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| T |
31429342 |
caaggatcaagactctcgtagacacgtgtttcttacgggattccttccctcaaaatccaaagtttcttcatttagattcattttttatttttcatagtct |
31429441 |
T |
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| Q |
195 |
caatcaaatcat-nnnnnnnnttgcattagcatgaattgatttctagaatttttcggttgta |
255 |
Q |
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| T |
31429442 |
caatcaaattataaaaaaaaattgcattagcatgaattgatttctagaatttttcggttgta |
31429503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 31429252 - 31429310
Alignment:
| Q |
8 |
gtgacatggatagctcatctaagaactatattaatcatcatatcattgctctgaaactt |
66 |
Q |
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| T |
31429252 |
gtgacatgaatagctaatctaagaactatactaatcatcataacattgctctgaaactt |
31429310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 3902639 - 3902566
Alignment:
| Q |
123 |
tttcttacgggattccttccctcaaaatccaaagtttcttcatttagattcatttttaatttttcatagtctca |
196 |
Q |
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| T |
3902639 |
tttcttacgggactccgcccctcaaaatccaaaattcaatcgtttagatccatttttaatttttcatattctca |
3902566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 9152118 - 9152190
Alignment:
| Q |
124 |
ttcttacgggattccttccctcaaaatccaaagtttcttcatttagattcatttttaatttttcatagtctca |
196 |
Q |
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| T |
9152118 |
ttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacccatttttaatttttcatattctca |
9152190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 36629530 - 36629590
Alignment:
| Q |
124 |
ttcttacgggattccttccctcaaaatccaaagtttcttcatttagattcatttttaattt |
184 |
Q |
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| T |
36629530 |
ttcttacgggactccatccttcaaaatccaaaattccatcgtttagactcatttttaattt |
36629590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 4936554 - 4936490
Alignment:
| Q |
124 |
ttcttacgggattccttccctcaaaatccaaagtttcttcatttagattcatttttaatttttca |
188 |
Q |
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| T |
4936554 |
ttcttatgggactccgtccctcaaaatccaaaatttcatcttttagacccatttttaatttttca |
4936490 |
T |
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