View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3445-Insertion-20 (Length: 123)
Name: NF3445-Insertion-20
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3445-Insertion-20 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 99; Significance: 3e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 40385330 - 40385212
Alignment:
| Q |
6 |
caccatattcatattcaataacccatttcagcataaaacactagaaaaa-tatgcatagcaagaaattcatattcaatgacccaatgaaaataaaggaag |
104 |
Q |
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| T |
40385330 |
caccatattcatatttaataacccatttcagcataaaacactagaaaaaatatgcatggcaagaaattcatagtcaatgacccaatgaaaataaaggaag |
40385231 |
T |
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| Q |
105 |
agatgaataatattatgta |
123 |
Q |
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| T |
40385230 |
agatgaataatattatgta |
40385212 |
T |
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Target: chr2 (Bit Score: 72; Significance: 3e-33; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 12731036 - 12730953
Alignment:
| Q |
6 |
caccatattcatattcaataacccatttcagcataaaacactaga-aaaatatgcatagcaagaaattcatattcaatgaccca |
88 |
Q |
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| T |
12731036 |
caccatattcatattcaataaaccatttcagcataaaacactagaaaaaatatgcatagcaagaaattcatattcaatgaccca |
12730953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 7e-22
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 12730866 - 12730790
Alignment:
| Q |
12 |
attcatattcaataacccatttcagcataaaacactagaaaaatatgcatagcaagaaattcatattcaatgaccca |
88 |
Q |
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| T |
12730866 |
attcatattcaataacccatttgagcataaaccgctaaaaaaatattcatagcaagaacttcatattcaatgaccca |
12730790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 12730913 - 12730848
Alignment:
| Q |
22 |
aataacccatttcagcataaaacactagaaaaatatgcatagcaagaaattcatattcaatgaccca |
88 |
Q |
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| T |
12730913 |
aataacccatttgagtaaaaaacacta-aagaatattcatagcaagaaattcatattcaataaccca |
12730848 |
T |
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