View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3445-Insertion-4 (Length: 833)
Name: NF3445-Insertion-4
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3445-Insertion-4 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 704; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 704; E-Value: 0
Query Start/End: Original strand, 7 - 833
Target Start/End: Original strand, 2019852 - 2020663
Alignment:
| Q |
7 |
aaatggtatatttaatttcttgagagtttacaaattgtcttttttatcacaaacttttagtttttattctttaacaagtgcccctaagtgcgcatgttag |
106 |
Q |
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| T |
2019852 |
aaatggtatatttaatttcttgagagtttacaaattgtcttttttatcacaaacttttagtttttattctttaacaagtgcccctaagtgcgcatgttag |
2019951 |
T |
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| Q |
107 |
caaaatccaaactttaataattgctctaaatgccctatgagcgcatgttagctaaacccaaactttaaccattgctctaatagattcttacatctaactt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2019952 |
caaaatccaaactttaataattgctctaaatgccctatgagcacatgttagctaaacccaaactttaa-----------atagattcttacatctaactt |
2020040 |
T |
|
| Q |
207 |
ctgttaagtctacattaaccattgagttaggttttgatttcgcggaatgtgaattgnnnnnnnttgtgatggagttgagaatgtttttgttatattttgg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2020041 |
ctgttaagtctacattaaccattgagttaggttttgatttcgcagaatgtgaattgaaaaaa-ttgtgatggagttgagaatgtttttgttatattttgg |
2020139 |
T |
|
| Q |
307 |
ggtaaaaaatgttgatatttgacgacgaaagcattgatataccgttatgctagtcttggttttcggtgatttcctatctcaaattttttaaatttaggtt |
406 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2020140 |
ggtaaaaaatgttaatatttgacgacgaaagcattgatataccgttatgctagtcttggttttcggtgatttcctatctcaaattttttaaatttaggtt |
2020239 |
T |
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| Q |
407 |
ttcgaaaattagggatgatatatatgagtttcgtaatgaagtgttgggatgaaatttaatatgctatgtagtacaaagtgttgtcaatcaatgttgtcga |
506 |
Q |
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| T |
2020240 |
ttcgaaaattagggatgatat--atgagttttgtaacgaagtgttgggatgaaatttaatatgcaatgtagtacaaagtgttgccaatcaatgttgtcga |
2020337 |
T |
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| Q |
507 |
cagtggatggcggagtatagctgatggttaaaaatccgctatataaacaagccattgcagcctatggcaccgtgacgacaggcattccttcacaaattat |
606 |
Q |
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| T |
2020338 |
cagtggatggcggagtatagctgatggttaaaaatccgctatataaacaagccattgcagcctatggcaccgtgacgacaggcattccttcacaaattat |
2020437 |
T |
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| Q |
607 |
ctatggtaagttgtccaaaacactgccatggtggtgccatgaccaccatttagtaacactgctgtcaaaaagcggttatagtggcactataacagtgcag |
706 |
Q |
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| T |
2020438 |
ctatggtaagttgtccaaaacaccgccatggtggtgccatgaccaccatttagtaacactgctgtcaaaaagcggttatagtggcactataacag-gcag |
2020536 |
T |
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| Q |
707 |
cgtaagggaatttgaacaagttgctattttttgtgattgacaacactaattttagatgatttatacatattcctgttatagagggttctatgattgcagt |
806 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2020537 |
cgtaagggaatttgaacaagttgctattttttgcgattgacaacactaattttagatgatttatacatattcctgttatagagggttctatgattgaagt |
2020636 |
T |
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| Q |
807 |
ctcttctgttcttcttgcccacttgta |
833 |
Q |
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||||||||||||||||||||||||||| |
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| T |
2020637 |
ctcttctgttcttcttgcccacttgta |
2020663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 2036578 - 2036786
Alignment:
| Q |
7 |
aaatggtatatttaatttcttgagagtttacaaattgtcttttttatcacaaacttttagtttttattctttaacaagtgcccctaagtgcgcatgttag |
106 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||| |||| | ||||||||| |
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| T |
2036578 |
aaattgtatatttaatttcttgaaagtttacaaattgtcttttttaacacaaacttttaatttgtattctttaacaagtgccc-taagagagcatgttag |
2036676 |
T |
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| Q |
107 |
caaaatccaaactttaataattgctctaaatgccctatgagcgcatgttagctaaacccaaactttaaccattgctctaatagattcttacatctaactt |
206 |
Q |
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| T |
2036677 |
caaaatccaa-ctttaatcattgctctaagtgccctaagagcggatgttagcaatgcccaaacttcaatcattgctctaatagattcttacatctaactt |
2036775 |
T |
|
| Q |
207 |
ctgttaagtct |
217 |
Q |
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||||||||||| |
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| T |
2036776 |
ctgttaagtct |
2036786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 631 - 720
Target Start/End: Original strand, 2017964 - 2018053
Alignment:
| Q |
631 |
gccatggtggtgccatgaccaccatttagtaacactgctgtcaaaaagcggttatagtggcactataacagtgcagcgtaagggaatttg |
720 |
Q |
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| T |
2017964 |
gccatggtggtgccacgaccaccatttagtaacactgttgtcaaaaagcggttatagtggcgctatgacagtgcagcgtaaagggatttg |
2018053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 479 - 603
Target Start/End: Original strand, 2017835 - 2017959
Alignment:
| Q |
479 |
acaaagtgttgtcaatcaatgttgtcgacagtggatggcggagtatagctgatggttaaaaatccgctatataaacaagccattgcagcctatggcaccg |
578 |
Q |
| |
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|||||||||||||||||||||||||| | | ||||||| || |||||| ||||||||||||||| ||||| ||||| |||||||||||||||| ||| | |
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| T |
2017835 |
acaaagtgttgtcaatcaatgttgtctatggcggatggcagaatatagccgatggttaaaaatcctctatacaaacacgccattgcagcctatgacactg |
2017934 |
T |
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| Q |
579 |
tgacgacaggcattccttcacaaat |
603 |
Q |
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|| || ||||||||||| ||||| |
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| T |
2017935 |
cgatgatgggcattccttcccaaat |
2017959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 680 - 761
Target Start/End: Original strand, 2035443 - 2035524
Alignment:
| Q |
680 |
ggttatagtggcactataacagtgcagcgtaagggaatttgaacaagttgctattttttgtgattgacaacactaattttag |
761 |
Q |
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| T |
2035443 |
ggttatagtggggctataacaatgcagcgtaaaggaatttgaacaaattcctattttttgcgattgacaacactgattttag |
2035524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 1994641 - 1994697
Alignment:
| Q |
150 |
catgttagctaaacccaaactttaaccattgctctaatagattcttacatctaactt |
206 |
Q |
| |
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||||||||| | || |||||||||| ||||||||||||||||||| |||||||||| |
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| T |
1994641 |
catgttagcaagactcaaactttaatcattgctctaatagattctaccatctaactt |
1994697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 282 - 328
Target Start/End: Original strand, 2017743 - 2017789
Alignment:
| Q |
282 |
tgagaatgtttttgttatattttggggtaaaaaatgttgatatttga |
328 |
Q |
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| T |
2017743 |
tgagaatgtttttgttatattttgagatacaaaatgttaatatttga |
2017789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 736 - 786
Target Start/End: Original strand, 2018050 - 2018100
Alignment:
| Q |
736 |
tttgtgattgacaacactaattttagatgatttatacatattcctgttata |
786 |
Q |
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||||||||||| |||| | ||||||||||||||||||||||| ||||||| |
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| T |
2018050 |
tttgtgattgataacattgattttagatgatttatacatatttgtgttata |
2018100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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