View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3445-Insertion-5 (Length: 871)

Name: NF3445-Insertion-5
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3445-Insertion-5
NF3445-Insertion-5
[»] chr3 (9 HSPs)
chr3 (8-365)||(48802185-48802542)
chr3 (506-864)||(48802693-48803058)
chr3 (448-494)||(6437982-6438028)
chr3 (438-496)||(11054443-11054500)
chr3 (438-496)||(23311728-23311785)
chr3 (438-496)||(36546474-36546531)
chr3 (438-496)||(36561784-36561841)
chr3 (438-491)||(48802618-48802674)
chr3 (438-496)||(23910630-23910687)
[»] chr8 (5 HSPs)
chr8 (438-496)||(41086563-41086621)
chr8 (438-496)||(7022580-7022637)
chr8 (438-496)||(7858454-7858511)
chr8 (448-494)||(13143661-13143706)
chr8 (438-495)||(26483460-26483515)
[»] chr7 (11 HSPs)
chr7 (440-496)||(35923180-35923235)
chr7 (438-496)||(18102457-18102514)
chr7 (438-496)||(25737802-25737859)
chr7 (438-496)||(47557922-47557979)
chr7 (438-493)||(39174181-39174235)
chr7 (464-494)||(6190944-6190974)
chr7 (438-496)||(14805798-14805855)
chr7 (438-496)||(15252792-15252849)
chr7 (448-493)||(44877792-44877835)
chr7 (542-587)||(5276166-5276214)
chr7 (440-493)||(46760435-46760487)
[»] scaffold0045 (1 HSPs)
scaffold0045 (438-496)||(77885-77942)
[»] chr5 (6 HSPs)
chr5 (438-496)||(842742-842799)
chr5 (438-496)||(6686311-6686368)
chr5 (542-612)||(7096182-7096255)
chr5 (438-496)||(11262060-11262117)
chr5 (438-496)||(43590138-43590195)
chr5 (463-496)||(25840760-25840793)
[»] chr4 (6 HSPs)
chr4 (438-495)||(41414778-41414834)
chr4 (438-495)||(47867806-47867862)
chr4 (438-496)||(14332685-14332742)
chr4 (438-496)||(26916251-26916308)
chr4 (444-496)||(2229173-2229224)
chr4 (438-496)||(28669169-28669226)
[»] chr1 (10 HSPs)
chr1 (438-495)||(35691320-35691376)
chr1 (438-496)||(12449143-12449200)
chr1 (438-496)||(32624182-32624239)
chr1 (438-496)||(39555762-39555819)
chr1 (438-496)||(43667476-43667533)
chr1 (530-611)||(28077103-28077187)
chr1 (438-496)||(24190399-24190455)
chr1 (443-496)||(2125965-2126017)
chr1 (448-494)||(16854034-16854082)
chr1 (449-494)||(24728845-24728889)
[»] scaffold0018 (1 HSPs)
scaffold0018 (438-493)||(154792-154846)
[»] chr6 (5 HSPs)
chr6 (438-496)||(3095897-3095954)
chr6 (444-496)||(21542346-21542397)
chr6 (438-495)||(11082422-11082477)
chr6 (438-496)||(34177817-34177874)
chr6 (438-496)||(35129231-35129288)
[»] chr2 (8 HSPs)
chr2 (438-496)||(6110376-6110433)
chr2 (438-496)||(41528184-41528241)
chr2 (444-493)||(45085188-45085236)
chr2 (448-494)||(14873859-14873905)
chr2 (438-496)||(28599324-28599381)
chr2 (438-496)||(35517050-35517107)
chr2 (448-494)||(45660261-45660306)
chr2 (449-494)||(25571943-25571987)
[»] scaffold0774 (1 HSPs)
scaffold0774 (444-490)||(3610-3655)
[»] scaffold0300 (1 HSPs)
scaffold0300 (438-496)||(749-806)


Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 365
Target Start/End: Original strand, 48802185 - 48802542
Alignment:
Q  8 cgacgcatcgtattagtggtacatagctcactattgcatgcaacctctaaggtcatcagaacttcaaatcttagaattctgacattgattgtgacaaaat 107  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48802185 cgacacatcgtattagtggttcatagctcactattgcatgcaacctctaaggtcatcagaacttcaaatcttagaattctgacattgagtgtgacaaaat 48802284  T
Q  108 cctacaaaatgacttgtaggatccggactgctcaaaccttacaagcactatctaagtcatatctctagtcaatatgaaactctcaaaagtcaaaacaacc 207  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48802285 cctacaaaatgacttgttggatccggactgctcaaacctaacaagcactatctaagtcatatctctagtcaatatgaaactctcaaaagtcaaaacaacc 48802384  T
Q  208 ctacacttagaatcaaaacatgtgatgcatggactgattcggaggaaataacaaagatctatcaagataaaaccaatttgaatctcacatcaagtattct 307  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48802385 caacacttagaatcaaaacatgtgatgcatggactgattcggaggaaataacaaagatctatcaagataaaaccaatttgaatctcacatcaagtagtct 48802484  T
Q  308 tgtttggatccaatcaatttaattaagcgcttatatcacaaatttttatctattcgtc 365  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48802485 tgtttggatccaaacaatttaattaagcgcttatatcacaaatttttatctattcgtc 48802542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 506 - 864
Target Start/End: Original strand, 48802693 - 48803058
Alignment:
Q  506 tattatgggacggagggagtatcgcataagtgcaattgtataagctatttttataaaaagataaataaagtcaaaccgtttttataagctatttaagaga 605  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48802693 tattatgggacggagggagtatcgtataagtgcaattgtataagctatctttataaaaagataaataaagtcaaaccgtttttataagctatttaagaga 48802792  T
Q  606 gcttatgcacatggcataacttgtttctataaactctcacagaatgtcatttgcttggtgaagagcaacatttgaatactaacctctacgaagcaatcat 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48802793 gcttatgcacatggcataacttgtttctataaactctcacagaatgtcatttgcttggtgaagagcaacatttgaatactaacctctacgaagcaatcat 48802892  T
Q  706 ggaaaaccatgcgaaggagctttccaggaatggaaggatcatttgaagaggatgtactgactgcatttcttatgaataactctgctgt--gacacgaagc 803  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||    
T  48802893 ggaaaaccatgcgaaggagctttccaggaatggaaggatcatttgaagaggatgtactgactgcatttcttatgaataactctgctgttggacatgaagc 48802992  T
Q  804 agcataagaagtcg-aagcaaga-tagcag-tac-gaggaaac-aacaagatag-aactgctatgaa 864  Q
    ||||| |||||||| |||||||| |||||| ||| |||||||| |||||||||| ||||||||||||    
T  48802993 agcat-agaagtcgaaagcaagattagcagttacagaggaaacaaacaagatagaaactgctatgaa 48803058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 448 - 494
Target Start/End: Complemental strand, 6438028 - 6437982
Alignment:
Q  448 gataaaagtttatttattttttcttatattttgggacaaagaaaatg 494  Q
    ||||||||||| ||| ||||| |||||||||||||||||||||||||    
T  6438028 gataaaagtttgtttttttttgcttatattttgggacaaagaaaatg 6437982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 11054443 - 11054500
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||| ||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  11054443 tcttggaaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 11054500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 23311728 - 23311785
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    |||||||||||||||||||||   | ||||| |||||||||||||||||||||||||||    
T  23311728 tcttgaaaaagataaaagtttgact-tttttgcttatattttgggacaaagaaaatgtg 23311785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 438 - 496
Target Start/End: Complemental strand, 36546531 - 36546474
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    |||||||||||| |||||||| | | ||||| |||||||||||||||||||||||||||    
T  36546531 tcttgaaaaagacaaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 36546474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 36561784 - 36561841
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    |||||||||||| |||||||| | | ||||| |||||||||||||||||||||||||||    
T  36561784 tcttgaaaaagacaaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 36561841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 438 - 491
Target Start/End: Original strand, 48802618 - 48802674
Alignment:
Q  438 tcttgaaaaagataaaagtttatttatttt---ttcttatattttgggacaaagaaa 491  Q
    ||||||||||||||||||||| ||| ||||   ||||||||||||||||||||||||    
T  48802618 tcttgaaaaagataaaagtttgttttttttttcttcttatattttgggacaaagaaa 48802674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 23910630 - 23910687
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||||||||||||||| ||| | | ||||| |||||||||||||||||| ||||||||    
T  23910630 tcttgaaaaagataaaaatttgtct-tttttgcttatattttgggacaaaaaaaatgtg 23910687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 41086563 - 41086621
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  41086563 tcttgaaaaagataaaagtttgtctttttttgcttatattttgggacaaagaaaatgtg 41086621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 7022580 - 7022637
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  7022580 tcttgaaaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 7022637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 438 - 496
Target Start/End: Complemental strand, 7858511 - 7858454
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||| ||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  7858511 tcttggaaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 7858454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 448 - 494
Target Start/End: Complemental strand, 13143706 - 13143661
Alignment:
Q  448 gataaaagtttatttattttttcttatattttgggacaaagaaaatg 494  Q
    ||||||||||||| | ||||| |||||||||||||||||||||||||    
T  13143706 gataaaagtttatct-tttttgcttatattttgggacaaagaaaatg 13143661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 438 - 495
Target Start/End: Complemental strand, 26483515 - 26483460
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgt 495  Q
    |||||||||| |||||||||| | |  ||||||||||||||||| |||||||||||||    
T  26483515 tcttgaaaaaaataaaagtttgtgt--tttttcttatattttggtacaaagaaaatgt 26483460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 440 - 496
Target Start/End: Complemental strand, 35923235 - 35923180
Alignment:
Q  440 ttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||    
T  35923235 ttgaaaaagataaaagtttatct-ttttttattatattttgggacaaagaaaatgtg 35923180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 438 - 496
Target Start/End: Complemental strand, 18102514 - 18102457
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  18102514 tcttgaaaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 18102457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 25737802 - 25737859
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||| ||||||||||||||| ||| ||||| |||||||||||||||||||||||||||    
T  25737802 tcttggaaaagataaaagttttttt-tttttgcttatattttgggacaaagaaaatgtg 25737859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 47557922 - 47557979
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    |||||||||| |||||||||| | | ||||| |||||||||||||||||||||||||||    
T  47557922 tcttgaaaaacataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 47557979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 438 - 493
Target Start/End: Complemental strand, 39174235 - 39174181
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaat 493  Q
    ||||||||||||||||||||| | | ||||| |||||||||||| |||||||||||    
T  39174235 tcttgaaaaagataaaagtttgtct-tttttacttatattttggaacaaagaaaat 39174181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 464 - 494
Target Start/End: Complemental strand, 6190974 - 6190944
Alignment:
Q  464 ttttttcttatattttgggacaaagaaaatg 494  Q
    |||||||||||||||||||||||||||||||    
T  6190974 ttttttcttatattttgggacaaagaaaatg 6190944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 438 - 496
Target Start/End: Complemental strand, 14805855 - 14805798
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||| ||||||||||||||| | | ||||  |||||||||||||||||||||||||||    
T  14805855 tcttggaaaagataaaagtttgtctgttttg-cttatattttgggacaaagaaaatgtg 14805798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 438 - 496
Target Start/End: Complemental strand, 15252849 - 15252792
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||| ||||||||||||||| | | ||||  |||||||||||||||||||||||||||    
T  15252849 tcttggaaaagataaaagtttgtctgttttg-cttatattttgggacaaagaaaatgtg 15252792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 448 - 493
Target Start/End: Complemental strand, 44877835 - 44877792
Alignment:
Q  448 gataaaagtttatttattttttcttatattttgggacaaagaaaat 493  Q
    |||||||||||| ||  |||||||||||||||||||||||||||||    
T  44877835 gataaaagtttaatt--tttttcttatattttgggacaaagaaaat 44877792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 587
Target Start/End: Original strand, 5276166 - 5276214
Alignment:
Q  542 tgtataagctatttttata--aaaagataa-ataaagtcaaaccgtttt 587  Q
    |||||||||||||||||||  ||||||||| ||||||||||||||||||    
T  5276166 tgtataagctatttttataacaaaagataacataaagtcaaaccgtttt 5276214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 440 - 493
Target Start/End: Original strand, 46760435 - 46760487
Alignment:
Q  440 ttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaat 493  Q
    |||||||| |||||||||| | | ||||| ||||||||||||||||||||||||    
T  46760435 ttgaaaaaaataaaagtttgtct-tttttacttatattttgggacaaagaaaat 46760487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 438 - 496
Target Start/End: Complemental strand, 77942 - 77885
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  77942 tcttgaaaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 77885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 842742 - 842799
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||| ||||||||||||||||| | ||||| |||||||||||||||||||||||||||    
T  842742 tcttggaaaagataaaagtttatct-tttttgcttatattttgggacaaagaaaatgtg 842799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 438 - 496
Target Start/End: Complemental strand, 6686368 - 6686311
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||| ||||||||||||||||| | |||| | ||||||||||||||||||||||||||    
T  6686368 tcttggaaaagataaaagtttatcttttttgt-ttatattttgggacaaagaaaatgtg 6686311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 542 - 612
Target Start/End: Complemental strand, 7096255 - 7096182
Alignment:
Q  542 tgtataagctatttttataa--aaagataaa-taaagtcaaaccgtttttataagctatttaagagagcttatg 612  Q
    |||||||||||||| |||||  ||||||||| |||||||||||| |||| ||||||||||  ||||||||||||    
T  7096255 tgtataagctatttctataacaaaagataaaataaagtcaaaccattttcataagctattatagagagcttatg 7096182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 11262060 - 11262117
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||| ||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  11262060 tcttggaaaagataaaagtttgtct-tttttacttatattttgggacaaagaaaatgtg 11262117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 43590138 - 43590195
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||||||||||||||||||| | | ||||| |||||||||||| ||||||||||||||    
T  43590138 tcttgaaaaagataaaagtttgtat-tttttgcttatattttggtacaaagaaaatgtg 43590195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 496
Target Start/End: Complemental strand, 25840793 - 25840760
Alignment:
Q  463 attttttcttatattttgggacaaagaaaatgtg 496  Q
    |||||| |||||||||||||||||||||||||||    
T  25840793 atttttgcttatattttgggacaaagaaaatgtg 25840760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 438 - 495
Target Start/End: Original strand, 41414778 - 41414834
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgt 495  Q
    ||||||||||||||||||||| | | ||||| ||||||||||||||||||||||||||    
T  41414778 tcttgaaaaagataaaagtttgtct-tttttacttatattttgggacaaagaaaatgt 41414834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 438 - 495
Target Start/End: Complemental strand, 47867862 - 47867806
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgt 495  Q
    ||||||||||||||||||||| | | ||||| ||||||||||||||||||||||||||    
T  47867862 tcttgaaaaagataaaagtttttct-tttttgcttatattttgggacaaagaaaatgt 47867806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 438 - 496
Target Start/End: Complemental strand, 14332742 - 14332685
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||| ||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  14332742 tcttggaaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 14332685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 438 - 496
Target Start/End: Complemental strand, 26916308 - 26916251
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||||||| ||||||||||||| | ||||| ||||||||||| |||||||||||||||    
T  26916308 tcttgaaaaggataaaagtttatct-tttttgcttatattttgagacaaagaaaatgtg 26916251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 444 - 496
Target Start/End: Complemental strand, 2229224 - 2229173
Alignment:
Q  444 aaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  2229224 aaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 2229173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 28669169 - 28669226
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||||||||||||||| ||| |   ||||| |||||||||||||||||||||||||||    
T  28669169 tcttgaaaaagataaaaatttgtcc-tttttgcttatattttgggacaaagaaaatgtg 28669226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 438 - 495
Target Start/End: Complemental strand, 35691376 - 35691320
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgt 495  Q
    ||||||||||||||||| ||||||| ||||| |||||||||||| |||||||||||||    
T  35691376 tcttgaaaaagataaaaatttattt-tttttacttatattttggtacaaagaaaatgt 35691320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 12449143 - 12449200
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||| ||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  12449143 tcttggaaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 12449200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 32624182 - 32624239
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||| ||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  32624182 tcttggaaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 32624239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 39555762 - 39555819
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||| ||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  39555762 tcttggaaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 39555819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 43667476 - 43667533
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||||||||||||||||||| | | ||||| ||||||||||| |||||||||||||||    
T  43667476 tcttgaaaaagataaaagtttgtct-tttttgcttatattttgagacaaagaaaatgtg 43667533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 530 - 611
Target Start/End: Complemental strand, 28077187 - 28077103
Alignment:
Q  530 cataagtgcaattgtataagctatttttataa--aaagataaat-aaagtcaaaccgtttttataagctatttaagagagcttat 611  Q
    |||||||| | ||||||||||||||| |||||  |||||||||  ||| |||||| ||||| ||||||||||| |||||||||||    
T  28077187 cataagtgtatttgtataagctatttctataaccaaagataaaagaaaatcaaactgttttcataagctattttagagagcttat 28077103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 438 - 496
Target Start/End: Complemental strand, 24190455 - 24190399
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||| ||||||||||||||| | |  ||||||||||||||||| ||||||||||||||    
T  24190455 tcttggaaaagataaaagtttgtct--tttttcttatattttggtacaaagaaaatgtg 24190399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 443 - 496
Target Start/End: Complemental strand, 2126017 - 2125965
Alignment:
Q  443 aaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    |||||||||||||||| | | ||||| |||||||||| ||||||||||||||||    
T  2126017 aaaaagataaaagtttgtct-tttttacttatattttaggacaaagaaaatgtg 2125965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 448 - 494
Target Start/End: Complemental strand, 16854082 - 16854034
Alignment:
Q  448 gataaaagtttatttatttttt--cttatattttgggacaaagaaaatg 494  Q
    ||||||||||| ||| ||||||  |||||||||||||||||||||||||    
T  16854082 gataaaagtttgtttttttttttgcttatattttgggacaaagaaaatg 16854034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 449 - 494
Target Start/End: Original strand, 24728845 - 24728889
Alignment:
Q  449 ataaaagtttatttattttttcttatattttgggacaaagaaaatg 494  Q
    |||||| |||||||||||| |||||||||||| |||||||||||||    
T  24728845 ataaaaatttatttatttt-tcttatattttgagacaaagaaaatg 24728889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 438 - 493
Target Start/End: Complemental strand, 154846 - 154792
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaat 493  Q
    ||||||||||||||||||||||| | ||||| ||||||||||| ||||||||||||    
T  154846 tcttgaaaaagataaaagtttatct-tttttacttatattttgagacaaagaaaat 154792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 3095897 - 3095954
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||| ||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  3095897 tcttggaaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 3095954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 444 - 496
Target Start/End: Complemental strand, 21542397 - 21542346
Alignment:
Q  444 aaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  21542397 aaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 21542346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 438 - 495
Target Start/End: Original strand, 11082422 - 11082477
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgt 495  Q
    ||||||||||||||||||||| | |  |||| |||||||||||| |||||||||||||    
T  11082422 tcttgaaaaagataaaagtttgtgt--ttttgcttatattttggtacaaagaaaatgt 11082477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 34177817 - 34177874
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||| ||||||||||||||| | | ||||| |||||||||||| ||||||||||||||    
T  34177817 tcttggaaaagataaaagtttgtgt-tttttacttatattttggtacaaagaaaatgtg 34177874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 35129231 - 35129288
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||| ||||||||||||||| | | ||||| ||| |||||||||||||||||||||||    
T  35129231 tcttggaaaagataaaagtttgtct-tttttgcttgtattttgggacaaagaaaatgtg 35129288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 6110376 - 6110433
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||| ||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  6110376 tcttggaaaagataaaagtttgtct-tttttgcttatattttgggacaaagaaaatgtg 6110433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 438 - 496
Target Start/End: Complemental strand, 41528241 - 41528184
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||||||||||||||||||| | | ||||| |||||||||||||||||| ||||||||    
T  41528241 tcttgaaaaagataaaagtttgtct-tttttgcttatattttgggacaaacaaaatgtg 41528184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 45085236 - 45085188
Alignment:
Q  444 aaaagataaaagtttatttattttttcttatattttgggacaaagaaaat 493  Q
    ||||||||||||||||| | ||||| ||||||||||||||||||||||||    
T  45085236 aaaagataaaagtttatct-tttttgcttatattttgggacaaagaaaat 45085188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 448 - 494
Target Start/End: Complemental strand, 14873905 - 14873859
Alignment:
Q  448 gataaaagtttatttattttttcttatattttgggacaaagaaaatg 494  Q
    ||||||| ||| ||| ||||| |||||||||||||||||||||||||    
T  14873905 gataaaaatttgtttttttttgcttatattttgggacaaagaaaatg 14873859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 28599324 - 28599381
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||| ||||||||||||||| | | |||||  ||||||||||||||||||||||||||    
T  28599324 tcttggaaaagataaaagtttgtct-tttttgattatattttgggacaaagaaaatgtg 28599381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 438 - 496
Target Start/End: Complemental strand, 35517107 - 35517050
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||||||||||||||||||| | | ||||| |||||||||||| || |||||||||||    
T  35517107 tcttgaaaaagataaaagtttgtct-tttttgcttatattttggtacgaagaaaatgtg 35517050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 448 - 494
Target Start/End: Complemental strand, 45660306 - 45660261
Alignment:
Q  448 gataaaagtttatttattttttcttatattttgggacaaagaaaatg 494  Q
    ||||||||||| ||| ||||| |||||||||||||||||||||||||    
T  45660306 gataaaagtttgttt-tttttgcttatattttgggacaaagaaaatg 45660261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 449 - 494
Target Start/End: Complemental strand, 25571987 - 25571943
Alignment:
Q  449 ataaaagtttatttattttttcttatattttgggacaaagaaaatg 494  Q
    |||||||||| ||| ||||| |||||||||||||||||||||||||    
T  25571987 ataaaagtttgttt-tttttgcttatattttgggacaaagaaaatg 25571943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0774 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0774
Description:

Target: scaffold0774; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 444 - 490
Target Start/End: Original strand, 3610 - 3655
Alignment:
Q  444 aaaagataaaagtttatttattttttcttatattttgggacaaagaa 490  Q
    ||||||||||||||||| | ||||| |||||||||||||||||||||    
T  3610 aaaagataaaagtttatct-tttttgcttatattttgggacaaagaa 3655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 749 - 806
Alignment:
Q  438 tcttgaaaaagataaaagtttatttattttttcttatattttgggacaaagaaaatgtg 496  Q
    ||||| ||||||||||||||| | | ||||| |||||||||||| ||||||||||||||    
T  749 tcttggaaaagataaaagtttgtgt-tttttgcttatattttggtacaaagaaaatgtg 806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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