View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3445-Insertion-6 (Length: 755)
Name: NF3445-Insertion-6
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3445-Insertion-6 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 596; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 29 - 755
Target Start/End: Original strand, 3232162 - 3232888
Alignment:
| Q |
29 |
tgtcctatatcaaaagcatgccaggatttgcacaaattgtgcaacgatttcatgcagtacttaacattattcaaaatcgcacaacgatttcaaccctccg |
128 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3232162 |
tgtcctatatcaaaagcgtgccaggatttgcacaaatcgtgcaacgatttcatgcagtacttaatattattcaaaatcgcacaacgatttcaaccctccg |
3232261 |
T |
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| Q |
129 |
gaccatgatttttgccgtgacaaaacctccaaaaccttctccaaatcgtgttacggnnnnnnnncaaacttcaatcatcaattttcagacaattctcaac |
228 |
Q |
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| T |
3232262 |
gaccatgatttttgccgtgacaaaacctccaaaaccttctccaaatcgtgttacggttttttttcaaacttcaatcatcaattttcaaacaattctcaac |
3232361 |
T |
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| Q |
229 |
aattacaactagaacttctttattgaaaatatgcatctacatttaaaccnnnnnnnaaaggaaatctacattaaaaacttgaaacatacattttatatga |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3232362 |
aattacaactagaacttctttattgaaaatatgcatctacatttaaacctttttttaaaggaaatctacattaaaaacttgaaacatacattttatatga |
3232461 |
T |
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| Q |
329 |
aactgataattgttttgctatgatggaactcaaacttttaacaaactaaaagtgttaaatatgaattgaattatggacgtttcttaaaacttgcaaacat |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3232462 |
aactgataattgttttgctatgatggaactcaaacttttaacaaactaaaagtgttaaatatgaattgaattatggacgtttcttaaaacttgcaaacat |
3232561 |
T |
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| Q |
429 |
cagttcaattaatcttggnnnnnnnnaattattagagttttnnnnnnnccgtttcattcaaatattaattacctttaaacaataaatatagatcacttga |
528 |
Q |
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| T |
3232562 |
cagttcaattaatcttggttttttttaattattagagttttaaaaaaaccgtttcattcaaatattaattacctttaaacaataaatatagatcacttga |
3232661 |
T |
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| Q |
529 |
ttactaacaagctaccaacaaattatttgagctatccttaatgttgcatctctnnnnnnntcaacccatggctacattcaacacctttagtttattacca |
628 |
Q |
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| T |
3232662 |
ttactaacaagctaccaacaaattatttgagctatccttaatgttgcatctctaaaaaaatcaacccatggcaacattcaacacctttagtttattacca |
3232761 |
T |
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| Q |
629 |
atagtaatagcttattgtgctttgttagttcaaaccggaatttcatctcatgttcaactatcaaatgatccccctcctcatgcaccaacccagtcatcat |
728 |
Q |
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| T |
3232762 |
atagtaatagcttattgtgctttgttagttcaaaccggaatttcatctcatgttcaactatcaaatgatccccctcctcatgcaccaacccagtcatcat |
3232861 |
T |
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| Q |
729 |
ggtttgaaaaacacttaaaaaattgtg |
755 |
Q |
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| T |
3232862 |
ggtttgaaaaacacttaaaaaattgtg |
3232888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 594 - 755
Target Start/End: Original strand, 3235312 - 3235473
Alignment:
| Q |
594 |
ccatggctacattcaacacctttagtttattaccaatagtaatagcttattgtgctttgttagttcaaaccggaatttcatctcatgttcaactatcaaa |
693 |
Q |
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|||||||||||||||| || ||||||||||||||||||||| || |||||| ||||||||||||| |||| |||||||||||||||| |||| ||||||| |
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| T |
3235312 |
ccatggctacattcaatacttttagtttattaccaatagtattaacttattttgctttgttagttgaaactggaatttcatctcatgctcaagtatcaaa |
3235411 |
T |
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| Q |
694 |
tgatccccctcctcatgcaccaacccagtcatcatggtttgaaaaacacttaaaaaattgtg |
755 |
Q |
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| T |
3235412 |
tgaaccccctcttgatgcatcaacccagccatcattgtttgaaaagcatttaaaaaattgtg |
3235473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 239 - 438
Target Start/End: Original strand, 3234943 - 3235143
Alignment:
| Q |
239 |
agaacttctttattgaaaatatgcatctacatttaaaccnnnnnnnaaaggaaatctacattaaaaacttgaaacatacattttatatgaaactgataat |
338 |
Q |
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| T |
3234943 |
agaacttctttattgaaaatatgcatctacatttaaaactctttttttaagacatctacatttaaaactcgtaacattcattttttatgaaactgataat |
3235042 |
T |
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| Q |
339 |
tgttttgctatgatggaactcaaacttttaacaaactaaaagtgttaaatatg--aattgaattatggacgtttcttaaaacttgcaaacatcagttcaa |
436 |
Q |
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| T |
3235043 |
cattttgcaacaatggaacccaaaattttaactaactaaaagtgttacatatgtaaatttaattatggacgttt-ttaaaccttgcaaacatcagttcaa |
3235141 |
T |
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| Q |
437 |
tt |
438 |
Q |
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|| |
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| T |
3235142 |
tt |
3235143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 487 - 545
Target Start/End: Original strand, 3235224 - 3235282
Alignment:
| Q |
487 |
caaatattaattacctttaaacaataaatatagatcacttgattactaacaagctacca |
545 |
Q |
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|||||||||||||| |||||| |||||||||| |||| ||| ||||||||||| |||| |
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| T |
3235224 |
caaatattaattactattaaactataaatatagctcacatgactactaacaagccacca |
3235282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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