View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3445-Insertion-8 (Length: 637)

Name: NF3445-Insertion-8
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3445-Insertion-8
NF3445-Insertion-8
[»] chr3 (1 HSPs)
chr3 (7-635)||(31103278-31103924)
[»] chr8 (2 HSPs)
chr8 (224-288)||(8119226-8119292)
chr8 (561-634)||(30334802-30334873)
[»] chr1 (1 HSPs)
chr1 (224-279)||(30420174-30420230)
[»] chr4 (2 HSPs)
chr4 (556-623)||(27578790-27578857)
chr4 (558-634)||(27578169-27578245)
[»] chr7 (2 HSPs)
chr7 (225-278)||(22377419-22377472)
chr7 (224-288)||(29758290-29758356)
[»] scaffold0022 (1 HSPs)
scaffold0022 (556-625)||(163261-163330)
[»] chr6 (1 HSPs)
chr6 (556-592)||(13493013-13493049)


Alignment Details
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 7 - 635
Target Start/End: Original strand, 31103278 - 31103924
Alignment:
Q  7 ataaccaactcaatttaagtccagtgatgaacctagatgcatcgcagaaaactacacaccataagtacaaaccagcaagctcagcgtgagacctgaaatt 106  Q
    |||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31103278 ataaccaactgaatttaaatccagtaatgaacctagatgcatcgcagaaaactacacaccataagtacaaaccagcaagctcagcgtgagaccttaaatt 31103377  T
Q  107 agattgtaaaaagaaattgatgtgtataaaattgcaaccattaaatggaccaaacgaaccagagacaagtctgagtaatcaaaccatcttttgaagaatg 206  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  31103378 agattgtaaaaagaaattgatgtgtataaaattacaaccattaaatggaccaaacgaaccaaagacacgtctgagtaatcaaaccgtcttttgaagaatg 31103477  T
Q  207 atttatgaagtgtctgtcaacacggacaaattcacgtaccaacagaccctgcaacaaatcacagcaagcatttcagccctttgaaccctacacgcaaagt 306  Q
    ||||||||||||||  ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31103478 atttatgaagtgtccatcaacacagacaaattcacgtaccaacagaccctgcgacaaatcacagcaagcatttcagccctttgaaccctacacgcaaagt 31103577  T
Q  307 aatcgtctttcccgtttatttaattttaatcagtgacccaaacaagctattggttaccnnnnnnncgtgctactggttgggtgctcccctgtactactat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       | |||||||||||||||||||||||||||||||||    
T  31103578 aatcgtctttcccgtttatttaattttaatcagtgacccaaacaagctattggttaccagaaaaacatgctactggttgggtgctcccctgtactactat 31103677  T
Q  407 tttatgaacctagattacttctttttatgccaagatgacatatataacttataac--------------------ataaagtcattcatctattaaattt 486  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||                    |||||||||||||||||||||||||    
T  31103678 tttatgaacctagattacttctttttattccaagatgacatatataacttataacataaataaaatttgattgttataaagtcattcatctattaaattt 31103777  T
Q  487 tgatttgaaattaaactttataatggattatgtaccatcacaatcaactaatttaagtgttgtcaaccaaccctacaaatcaacacgagtcgttttagca 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  31103778 tgatttgaaattaaactttataatggattatgtaccatcacaatca--taatttaagtgtagtcaaccaaccctacaaatcaacacgagtcgtttcagca 31103875  T
Q  587 tgttttattttcactcgcgcgttttctgggaaacttctcataaagtcat 635  Q
    |||||| || ||||||||||||||| |||||||||||||||||||||||    
T  31103876 tgttttgttctcactcgcgcgttttttgggaaacttctcataaagtcat 31103924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 8119226 - 8119292
Alignment:
Q  224 caacacggacaa-attcacgtaccaacagaccctgcaacaaatcacagcaagcatt-tcagcccttt 288  Q
    ||||||| |||| ||||| |||||||||| |||||||||| ||||||||||||||| ||||||||||    
T  8119226 caacacgaacaagattcatgtaccaacagcccctgcaacatatcacagcaagcattatcagcccttt 8119292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 561 - 634
Target Start/End: Original strand, 30334802 - 30334873
Alignment:
Q  561 acaaatcaacacgagtcgttttagcatgttttattttcactcgcgcgttttctgggaaacttctcataaagtca 634  Q
    ||||||||||| ||||| ||||| | |||||| ||||||||  | |||||| ||||||||||||||||| ||||    
T  30334802 acaaatcaacatgagtctttttaacgtgttttgttttcact--cacgttttatgggaaacttctcataatgtca 30334873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 30420174 - 30420230
Alignment:
Q  224 caacacggacaa-attcacgtaccaacagaccctgcaacaaatcacagcaagcattt 279  Q
    |||||||||||| |||||||||||||||  |||||||||||||||| || |||||||    
T  30420174 caacacggacaagattcacgtaccaacaacccctgcaacaaatcactgcgagcattt 30420230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 556 - 623
Target Start/End: Original strand, 27578790 - 27578857
Alignment:
Q  556 accctacaaatcaacacgagtcgttttagcatgttttattttcactcgcgcgttttctgggaaacttc 623  Q
    ||||||||||||||||| |||| ||| |||||| ||| |  |||||||| || |||||||||||||||    
T  27578790 accctacaaatcaacacaagtcttttcagcatgatttgtcctcactcgcacgctttctgggaaacttc 27578857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 634
Target Start/End: Original strand, 27578169 - 27578245
Alignment:
Q  558 cctacaaatcaacacgagtcgttttagcatgttttattttcactcgcgcgttttctgggaaacttctcataaagtca 634  Q
    |||||||  ||||||||||| ||| ||| |||||| |  |||||||| ||||||| |||||||||| ||||| ||||    
T  27578169 cctacaacccaacacgagtcttttcagcgtgttttgtcctcactcgcacgttttcagggaaacttcccataaggtca 27578245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 22377472 - 22377419
Alignment:
Q  225 aacacggacaa-attcacgtaccaacagaccctgcaacaaatcacagcaagcatt 278  Q
    ||||||||||| ||||| |||||||||| |||||| |||||||||||||||||||    
T  22377472 aacacggacaagattcatgtaccaacag-ccctgcgacaaatcacagcaagcatt 22377419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 29758356 - 29758290
Alignment:
Q  224 caacacggacaa-attcacgtaccaacagaccctgcaacaaatcacagcaagca-tttcagcccttt 288  Q
    |||||||||||| |||||||||||||||| |||||| |||| |||||||  ||| ||||||||||||    
T  29758356 caacacggacaagattcacgtaccaacagcccctgcgacaattcacagcgcgcattttcagcccttt 29758290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 556 - 625
Target Start/End: Complemental strand, 163330 - 163261
Alignment:
Q  556 accctacaaatcaacacgagtcgttttagcatgttttattttcactcgcgcgttttctgggaaacttctc 625  Q
    |||||||||| ||||||||||| ||| ||| |||||| |  |||||||| || || ||||||||||||||    
T  163330 accctacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttactgggaaacttctc 163261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 556 - 592
Target Start/End: Complemental strand, 13493049 - 13493013
Alignment:
Q  556 accctacaaatcaacacgagtcgttttagcatgtttt 592  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  13493049 accctacaaatcaacacgagtcttttcagcatgtttt 13493013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University