View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3445-Insertion-9 (Length: 613)
Name: NF3445-Insertion-9
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3445-Insertion-9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 7 - 484
Target Start/End: Complemental strand, 10464641 - 10464163
Alignment:
| Q |
7 |
aagaaacatgcattatagactatgctaagaacgtgcgtgatgccttttgcatgccgaaatatgagatttgtaatggggtttgaatatgatttggagggag |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10464641 |
aagaaacatgcattatagactatgctaagaacgtgcgtgataccttt-gcatgccaaaatatgaggtttgtaatggggtttgaatatgatttggagggag |
10464543 |
T |
|
| Q |
107 |
catttcactcatattatagtggagagc-gactcgaataatctcagtgatatgattattgaaaatttcaaatttatgggaatatctctatcttactgctct |
205 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| |||| ||||| |
|
|
| T |
10464542 |
catttcactcatattatagtggagagccgactcgaataatctcaatgatatgattattgaaaatttcaagtttatgggaatatcactaccttagtgctcc |
10464443 |
T |
|
| Q |
206 |
gaatcctacaactattgaagaacagttggcacgtgtaaattagccatacttggagtgaggaaaatagaagtgttgcatgacttgtaaatttcaacatctc |
305 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10464442 |
gaatcctacaactattgacgaacagttggcacgtgtaaattagccatacttaacatgaggaaaatagaagtgttgtatgacttgtaaatttcaacatctc |
10464343 |
T |
|
| Q |
306 |
tgtagatagtttggatttgtttggtttggagattt-cttccaacgaaaaactaatgtttcatggtattttaggagcttgcatgcataagaatgtttgttt |
404 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10464342 |
tatagatagtttggatttgtttgttttggagattttcttccaacgagaaactaatgtttcatggtattttaggagcttgcatgcataagaatgtttgttt |
10464243 |
T |
|
| Q |
405 |
catatttctatctgtatatttgaaacataaatgtgtgttcattaataaagtgagtgtaaattagtaaaatgagtgtaaat |
484 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10464242 |
catatttctatttgtatatttgaaacataaatgcatgttcattaataaagtgagtgtaaattagtaaaatgagtgtaaat |
10464163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 485 - 613
Target Start/End: Complemental strand, 10463620 - 10463493
Alignment:
| Q |
485 |
aattaagaaacattatttaatgaaagttacaaaactaaccttcaatttactagttttaagtcacagagatgaatgatatttttgttcaaattaaatgaaa |
584 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| || |
|
|
| T |
10463620 |
aattaaaaaacattatttaatgaaagttacaaaactaaccttcaatttactagttttaagtcacaaagatgaatgatattttggttcaaattaaatg-aa |
10463522 |
T |
|
| Q |
585 |
agatgctcatttgttaatttacacattaa |
613 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10463521 |
agatgctcatttgttaatttacacattaa |
10463493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 575
Target Start/End: Original strand, 14188482 - 14188557
Alignment:
| Q |
500 |
tttaatgaaagttacaaaactaaccttcaatttactagttttaagtcacagagatgaatgatatttttgttcaaat |
575 |
Q |
| |
|
|||||||||| |||| ||| |||||||||| || ||||||||| | | | ||||||||||||||||||| ||||| |
|
|
| T |
14188482 |
tttaatgaaaattacgaaaataaccttcaagctattagttttaaataataaagatgaatgatatttttgtccaaat |
14188557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 421 - 488
Target Start/End: Complemental strand, 28598757 - 28598692
Alignment:
| Q |
421 |
tatttgaaacataaatgtgtgttcattaataaagtgagtgtaaattagtaaaatgagtgtaaataatt |
488 |
Q |
| |
|
||||||||||||||| |||| |||| || |||||||||||||||||| || || |||||||||||| |
|
|
| T |
28598757 |
tatttgaaacataaaggtgt--tcatcaacaaagtgagtgtaaattagcaaggtgggtgtaaataatt |
28598692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 541
Target Start/End: Original strand, 45414577 - 45414632
Alignment:
| Q |
485 |
aattaagaaacattatttaatgaaagttacaaaactaaccttcaatttactagtttt |
541 |
Q |
| |
|
|||||| ||||||| |||||||||| ||| ||||||||||||||| | ||||||||| |
|
|
| T |
45414577 |
aattaacaaacatt-tttaatgaaaattataaaactaaccttcaagtaactagtttt |
45414632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University