View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3445R-Insertion-4 (Length: 500)
Name: NF3445R-Insertion-4
Description: NF3445R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3445R-Insertion-4 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 9 - 500
Target Start/End: Original strand, 43255454 - 43255945
Alignment:
| Q |
9 |
aattattctagttcttgtaaatgtcatttcttacaaggccatatcatgaaacatgctcacaggatgccaagacaagaaagtgaagaaaaggtggttgagn |
108 |
Q |
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| T |
43255454 |
aattattctagttcttgtaaatgtcatttcttacaaggccacatcatgaaacatgctcacaggatgctaagacaagaaagtgaagaaaaggtggttgagt |
43255553 |
T |
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| Q |
109 |
nnnnnnggtaataattataacttacagcaatcaacaagagcaaagaaaagaaaagagcatatatataatacattcatttagtggaacttgagactggtca |
208 |
Q |
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| T |
43255554 |
ttttttggtaataattataacttacaacaaccaacaagagcaaagaaaataaaggagcatatatataatacattcatttagtggaacttgagactggtca |
43255653 |
T |
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| Q |
209 |
agatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatattgccaa |
308 |
Q |
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| T |
43255654 |
agatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatattgccaa |
43255753 |
T |
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| Q |
309 |
catagctaatcttccattcttaacttccttcagctttaattctttcaatgatttctcatctttaccaaaaccaagagggttaaatataggtccaccaggg |
408 |
Q |
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| T |
43255754 |
cattgctaaccttccattcttaacttccttcagctttaattctttcaatgatttctcatctttaccaaaaccaagagggttaaatataggtccaccaggg |
43255853 |
T |
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| Q |
409 |
tatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttcccatggaaccaggattgtaccaatcttggagtct |
500 |
Q |
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| T |
43255854 |
tatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttcccatggaaccaggattgtaccaatcttggagtct |
43255945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 14 - 496
Target Start/End: Original strand, 43258725 - 43259207
Alignment:
| Q |
14 |
ttctagttcttgtaaatgtcatttcttacaaggccatatcatgaaacatgctcacaggatgccaagacaagaaagtgaagaaaaggtggttgagnnnnnn |
113 |
Q |
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| T |
43258725 |
ttctagttcttgtaaatgtcatttcttacaaggccacatcatgaaacatgctcacaagatgctaagacaagaaagtgaagaaaaggtggttgagtttttt |
43258824 |
T |
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| Q |
114 |
nggtaataattataacttacagcaatcaacaagagcaaagaaaagaaaagagcatatatataatacattcatttagtggaacttgagactggtcaagatg |
213 |
Q |
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| T |
43258825 |
tggtaataattataacttacaacaaccaacaagagcaaagaaaataaaggagcatatatataatacattcatttagtggaacttgagactggtcaagatg |
43258924 |
T |
|
| Q |
214 |
ttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatattgccaacatag |
313 |
Q |
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| T |
43258925 |
ttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatattgccaacattg |
43259024 |
T |
|
| Q |
314 |
ctaatcttccattcttaacttccttcagctttaattctttcaatgatttctcatctttaccaaaaccaagagggttaaatataggtccaccagggtatgc |
413 |
Q |
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| T |
43259025 |
ctaaccttccattcttaacttccttcagctttaattccttcaatgatttctcatctttaccaaaaccaagagggttaaatataggtccaccagggtatgc |
43259124 |
T |
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| Q |
414 |
tggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttcccatggaaccaggattgtaccaatcttgga |
496 |
Q |
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| T |
43259125 |
tggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttcccatggagccaggattgtaccaatcttgga |
43259207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 167 - 470
Target Start/End: Original strand, 43247615 - 43247918
Alignment:
| Q |
167 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaac |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
43247615 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtttgaagggtcagccaaatgatttaagaagttttggtatggtccaac |
43247714 |
T |
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| Q |
267 |
tcctgtaacaagagcttgaataaagtaacccaatattgccaacatagctaatcttccattcttaacttccttcagctttaattctttcaatgatttctca |
366 |
Q |
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| T |
43247715 |
tcttgtaactagagcttgaacaaagtaacccaatattgccaacatagctaaccttccattcttaacttccttcagctttaaatccttcaatgatttctca |
43247814 |
T |
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| Q |
367 |
tctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttc |
466 |
Q |
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| T |
43247815 |
tctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcaccggaaccgccaagacctttctcaagtcctaaaaagtattgttttc |
43247914 |
T |
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| Q |
467 |
ccat |
470 |
Q |
| |
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|||| |
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| T |
43247915 |
ccat |
43247918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 43233964 - 43234059
Alignment:
| Q |
208 |
aagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatatt |
303 |
Q |
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| T |
43233964 |
aagatgttgttgttgaaagggtcagccaaatgatccaagaggttttggtatggtccaactcctgtaacaagagattgaacaaagtcacccagtatt |
43234059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 43254090 - 43254144
Alignment:
| Q |
167 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtt |
221 |
Q |
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| T |
43254090 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtt |
43254144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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