View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3445_high_13 (Length: 267)
Name: NF3445_high_13
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3445_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 48067660 - 48067418
Alignment:
| Q |
16 |
cagtttcttacgcaactatctgaattttcatttgaaccaaacagggtaggccaggaggaggctattgacaaagaggtccgcgatgatggaaggtagttct |
115 |
Q |
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| T |
48067660 |
cagtttcttacgcaactatctgaattttcatttgaaccaaacagggtaggccaggaggaggctattgacaaagaggtccgcgatgatggcaggtagttct |
48067561 |
T |
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| Q |
116 |
ttctgatactcctttttgttggcaaatatgaaggtgaagaagaataaagatgaaattgctctttgagactgttattgcaagtccttgaattgtgaccaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48067560 |
ttctgatactcctttttgttggcaaatatgaaggtgaagaagaataaagatgaaattgctctttgagactgttattgcaagtccttgaattgtgaccaaa |
48067461 |
T |
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| Q |
216 |
gtttccacaatatgagcatttcctacctattctcatttcttat |
258 |
Q |
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| T |
48067460 |
gtttccacaatatgagcatttcctagctattctcatttcttat |
48067418 |
T |
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