View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3445_high_7 (Length: 306)
Name: NF3445_high_7
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3445_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 22 - 298
Target Start/End: Original strand, 22034364 - 22034639
Alignment:
| Q |
22 |
atacattatctcactgtttttcctgcttccccaagcaaaatccaacttcctaatatattaaagtagcatttgacacactacctctcattgatgtataaac |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22034364 |
atacattatctcactgtttttcctgcttccccaagcaaaatccaacttcctaatatattaaagtagcatttgacacactacctctcattgatgtataaac |
22034463 |
T |
|
| Q |
122 |
atgtatgctggcaatttaagtttctaaagaaacatttcaccaaacttcaaaggnnnnnnnnccctttcatgattccatatatttcccaccctccatcact |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22034464 |
atgtatgctggcaatttaagtttctaaagaaacatttcaccaaacttcaaagg-aaaaaaaccctttcatgattccatatatttcccaccctccatcact |
22034562 |
T |
|
| Q |
222 |
cccacatgcatcaaagtattcacttcaaggaccacccttccattttcaactcctttctacaaaatatggtgatgatg |
298 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22034563 |
cctacatgcatcaaagcattcacttcaaggaccacccttccattttcaactcctttctacaaaatatggtgatgatg |
22034639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University