View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3445_low_1 (Length: 608)
Name: NF3445_low_1
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3445_low_1 |
 | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 459; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 28151557 - 28152060
Alignment:
| Q |
1 |
tgattctattgggttcctgaataagcttaaaatcttgaacgctcatnnnnnnnttaccataatttacgactacatggatttggaatgtttcttatgttac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28151557 |
tgattctattgggttcctgaataagcttaaaatcttgaacgctcataaaaaaattaccataatttacgactacatggatttggaatgtttcttaggttac |
28151656 |
T |
|
| Q |
101 |
caagtaatattctgatgatgccaaaattgtcttggattgatgttcagggttatcatctgttgccaaaccagagtgataaaccaagtcccatggtgtccac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28151657 |
caagtaatattctgatgatgccaaaattgtcttggattgatgttcagggttatcatctgttgccaaaccagagtgataaaccaagtcccatggtgtccac |
28151756 |
T |
|
| Q |
201 |
aaatgtacaatctcttgtgcctagaaaatgcaaccgaacagatgaatcttttcgaataattctcaagtggtttgccaatatgacacacttagacttattg |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28151757 |
aaatgtacaatctcttgtgcatagaaaatgcaaccgaacagatgaatcttttccaataattctcaagtggtttgccaatatgacacacttagacttattg |
28151856 |
T |
|
| Q |
301 |
aagagtagtttcacaattctttcggaatgtcttcaagaaattagatggtttccgccaaatttaaaatgcttgtctgcattgaattgtaaatcttcaagtt |
400 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28151857 |
aagagtaatttcacaattcttccggaatgtcttcaagaaattagatggtttccgccaaatttaaaatgcttgtctgcattgaattgtaaatcatcaagtt |
28151956 |
T |
|
| Q |
401 |
cctcatgtagaaacatgctactgaatcaggttttgttttttcttgtatttaacttaatctttcatagcatactttatatttgtaaacttacaagttcttt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28151957 |
cctcatgtagaaacatgctactgaatcaggttttgttttttcttgtatttaacttaatctttcatagcatactttatatttgtaaacttacaagttcttt |
28152056 |
T |
|
| Q |
501 |
atga |
504 |
Q |
| |
|
|||| |
|
|
| T |
28152057 |
atga |
28152060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 330 - 591
Target Start/End: Complemental strand, 28095751 - 28095490
Alignment:
| Q |
330 |
tcttcaagaaattagatggtttccgccaaatttaaaatgcttgtctgcattgaattgtaaatcttcaagttcctcatgtagaaacatgctactgaatcag |
429 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||| ||||||||| | ||||| | |||| |||||||||||||||| |||||||||| ||||| |
|
|
| T |
28095751 |
tcttcaagaaattagagcaattccaccaaatttaaaattcttgtctgcgataaattgcgagtctttgagttcctcatgtagaagcatgctactggatcag |
28095652 |
T |
|
| Q |
430 |
gttttgttttttcttgtatttaacttaatctttcatagcatactttatatttgtaaacttacaagttctttatgactaataggaactgcatgaagttgga |
529 |
Q |
| |
|
|||||| ||||||| ||||| | || || |||| || | |||||||| ||| |||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28095651 |
gttttgcattttcttttatttgagttcatatttcttaacttactttatctttctaaactcacaagttatttatgactaataggaactgcatgaagttgga |
28095552 |
T |
|
| Q |
530 |
gacatcatgtttcgtttgtccggaacttcgaggattccagagtcgtttaagcaccaaagcac |
591 |
Q |
| |
|
|||| ||||||||| ||| | ||||||| ||||||||| || |||| ||||||||||||| |
|
|
| T |
28095551 |
gacaccatgtttcgattgccaggaactttaaggattccaaggtggtttgagcaccaaagcac |
28095490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 74 - 329
Target Start/End: Complemental strand, 28096058 - 28095803
Alignment:
| Q |
74 |
atggatttggaatgtttcttatgttaccaagtaatattctgatgatgccaaaattgtcttggattgatgttcagggttatcatctgttgccaaaccagag |
173 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||| ||||| |||||||||||||||||||| || |||||||||| ||||| |||||||| || | |
|
|
| T |
28096058 |
atggatttagaatgtttcttaggttaccaagtagcattctcgtgatgccaaaattgtcttgggttcttgttcagggtcgccatctattgccaaaacaatg |
28095959 |
T |
|
| Q |
174 |
tgataaaccaagtcccatggtgtccacaaatgtacaatctcttgtgcctagaaaatgcaaccgaacagatgaatcttttcgaataattctcaagtggttt |
273 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| |||||||||||| | | ||||||||| ||||| ||||||| ||| ||||||| | ||||||||| |
|
|
| T |
28095958 |
tgataaaccaagttccatggtgtcctcaaatgtaaaatctcttgtgctaatagaatgcaacctaacaggtgaatctcttccaataatttttaagtggttt |
28095859 |
T |
|
| Q |
274 |
gccaatatgacacacttagacttattgaagagtagtttcacaattctttcggaatg |
329 |
Q |
| |
|
|| ||| ||||| | ||| |||||| || |||| | ||||||||||| ||||||| |
|
|
| T |
28095858 |
gctaatgtgacaaatttaaacttatcaaaaagtaatatcacaattcttccggaatg |
28095803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 500 - 591
Target Start/End: Original strand, 28152218 - 28152309
Alignment:
| Q |
500 |
tatgactaataggaactgcatgaagttggagacatcatgtttcgtttgtccggaacttcgaggattccagagtcgtttaagcaccaaagcac |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
28152218 |
tatgactaataggaactgcatgaagttggagacatcatgttttgtttgaccggaactttgaggattccagagtcgtttaagcaccagagcac |
28152309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 329 - 530
Target Start/End: Complemental strand, 26340794 - 26340594
Alignment:
| Q |
329 |
gtcttcaagaaattagatggtttccgccaaatttaaaatgcttgtctgcattgaattgtaaatcttcaagttcctcatgtagaaacatgctactgaatca |
428 |
Q |
| |
|
|||||| |||||||||| | |||| ||| |||||||||||||||||||||| | || ||| || ||||| ||||||||||||| ||||| ||||| |
|
|
| T |
26340794 |
gtcttctagaaattagaatgattccaccatatttaaaatgcttgtctgcattaagccgtgaatatttgagttcgtcatgtagaaacaagctacataatca |
26340695 |
T |
|
| Q |
429 |
ggttttgttttttcttgtatttaacttaatctttcatagcatactttatatttgtaaacttacaagttctttatgactaataggaactgcatgaagttgg |
528 |
Q |
| |
|
||||| |||||||| ||||| ||||| || ||||||||| ||||||| ||| ||||||| |||||| || |||||||| ||||||||||||| ||||| |
|
|
| T |
26340694 |
ggtttatttttttctcgtatt-aacttcatatttcatagcgcactttatctttctaaacttgcaagttattcatgactaacaggaactgcatgatgttgg |
26340596 |
T |
|
| Q |
529 |
ag |
530 |
Q |
| |
|
|| |
|
|
| T |
26340595 |
ag |
26340594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 294
Target Start/End: Complemental strand, 26341038 - 26340859
Alignment:
| Q |
115 |
atgatgccaaaattgtcttggattgatgttcagggttatcatctgttgccaaaccagagtgataaaccaagtcccatggtgtccacaaatgtacaatctc |
214 |
Q |
| |
|
|||||||| ||||||||||| ||| ||| | ||||||||||| | || || ||| ||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
26341038 |
atgatgcctaaattgtcttgcatttttgtcgatggttatcatctacttccgaaagagactgataaaccaagtaccatggtgtgttcaaatgtacaatcta |
26340939 |
T |
|
| Q |
215 |
ttgtgcctagaaaatgcaaccgaacagatgaatcttttcgaataattctcaagtggtttgccaatatgacacacttagac |
294 |
Q |
| |
|
|||||| | | ||||||||| ||| ||||||||| ||| |||| ||||||||||||| ||| ||||| |||||||| |
|
|
| T |
26340938 |
ttgtgctaacagaatgcaacctaacggatgaatctcttccaatagcgctcaagtggtttgaaaatgtgacatacttagac |
26340859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 334 - 436
Target Start/End: Complemental strand, 2170933 - 2170831
Alignment:
| Q |
334 |
caagaaattagatggtttccgccaaatttaaaatgcttgtctgcattgaattgtaaatcttcaagttcctcatgtagaaacatgctactgaatcaggttt |
433 |
Q |
| |
|
|||||||||| | || ||||||||| ||||||||||||||||||||| | || || || | | |||||||||||||| ||||||||| | |||||||| |
|
|
| T |
2170933 |
caagaaattacagggattccgccaagtttaaaatgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgctacttactcaggttt |
2170834 |
T |
|
| Q |
434 |
tgt |
436 |
Q |
| |
|
||| |
|
|
| T |
2170833 |
tgt |
2170831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 357 - 438
Target Start/End: Original strand, 28526593 - 28526674
Alignment:
| Q |
357 |
aaatttaaaatgcttgtctgcattgaattgtaaatcttcaagttcctcatgtagaaacatgctactgaatcaggttttgttt |
438 |
Q |
| |
|
|||| ||||||| |||||| |||| ||||| ||||| | | ||| |||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
28526593 |
aaatctaaaatggttgtctccattaaattgcaaatcgttgacttcgtcatgtagaagcatgctaatgaatcaggttttgttt |
28526674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 28191295 - 28191335
Alignment:
| Q |
399 |
ttcctcatgtagaaacatgctactgaatcaggttttgtttt |
439 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
28191295 |
ttcctcgtgtagaaacatgctattgaatcaggttttgtttt |
28191335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 28096309 - 28096274
Alignment:
| Q |
1 |
tgattctattgggttcctgaataagcttaaaatctt |
36 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28096309 |
tgattctattgggttcctgaataaacttaaaatctt |
28096274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26341321 - 26341280
Alignment:
| Q |
1 |
tgattctattgggttcctgaataagcttaaaatcttgaacgc |
42 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||| |||||||| |
|
|
| T |
26341321 |
tgattctattgggttcttgaataaacttaaaattttgaacgc |
26341280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 327 - 439
Target Start/End: Original strand, 16693983 - 16694095
Alignment:
| Q |
327 |
atgtcttcaagaaattagatggtttccgccaaatttaaaatgcttgtctgcattgaattgtaaatcttcaagttcctcatgtagaaacatgctactgaat |
426 |
Q |
| |
|
|||||||| |||||||||| || |||| |||||||||||| | |||||||||||| | ||| |||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
16693983 |
atgtcttcgagaaattagagggattcctccaaatttaaaacgtttgtctgcattgcaatgtgaatctttgtcttcctcatgcagaagcatgctactgaat |
16694082 |
T |
|
| Q |
427 |
caggttttgtttt |
439 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
16694083 |
caggttttctttt |
16694095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 321
Target Start/End: Original strand, 3282316 - 3282476
Alignment:
| Q |
161 |
tgccaaaccagagtgataaaccaagtcccatggtgtccacaaatgtacaatctcttgtgcctagaaaatgcaaccgaacagatgaatcttttcgaataat |
260 |
Q |
| |
|
||||||| || ||||||||||||||| ||||| ||||| ||||||||||| | |||||| | ||| || |||| ||||||||||||| ||| |||| | |
|
|
| T |
3282316 |
tgccaaaacaaagtgataaaccaagttccatgttgtcctcaaatgtacaagttattgtgctaacaaattgtaacctaacagatgaatctcttccaatagt |
3282415 |
T |
|
| Q |
261 |
tctcaagtggtttgccaatatgacacacttagacttattgaagagtagtttcacaattctt |
321 |
Q |
| |
|
||| | ||||||| | ||| ||||| | ||| |||||| |||| || ||||||||||||| |
|
|
| T |
3282416 |
tctgaggtggtttactaatgtgacatatttacacttatcaaagaataatttcacaattctt |
3282476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 369 - 450
Target Start/End: Original strand, 3282519 - 3282598
Alignment:
| Q |
369 |
cttgtctgcattgaattgtaaatcttcaagttcctcatgtagaaacatgctactgaatcaggttttgttttttcttgtattt |
450 |
Q |
| |
|
||||| |||||| |||||| |||||| ||||| || ||||||| |||||||||||||||||||||| | |||||||||||| |
|
|
| T |
3282519 |
cttgtttgcattaaattgtgaatctttgagttc-tcgtgtagaagcatgctactgaatcaggttttg-tgtttcttgtattt |
3282598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 334 - 436
Target Start/End: Original strand, 12328 - 12430
Alignment:
| Q |
334 |
caagaaattagatggtttccgccaaatttaaaatgcttgtctgcattgaattgtaaatcttcaagttcctcatgtagaaacatgctactgaatcaggttt |
433 |
Q |
| |
|
|||||||||| | || ||||||||| ||||||||||||||||||||| | || || || | | |||||||||||||| ||||||||| | |||||||| |
|
|
| T |
12328 |
caagaaattacagggattccgccaagtttaaaatgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgctacttactcaggttt |
12427 |
T |
|
| Q |
434 |
tgt |
436 |
Q |
| |
|
||| |
|
|
| T |
12428 |
tgt |
12430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University