View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3445_low_13 (Length: 273)
Name: NF3445_low_13
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3445_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 18790391 - 18790650
Alignment:
| Q |
1 |
atatttgcatgaataaaa-atgctggagacacttacatgcggcaatggtagctagaatgacaaggatattaaacaagtttgagaagtggtttgccatttg |
99 |
Q |
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| T |
18790391 |
atatttgcatgaataaaaaatgctggagacacttacctgcggcaatggtagctagaatgacaaggatattaaacaagtttgagaagtggtttgccatttg |
18790490 |
T |
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| Q |
100 |
ataacaattatatattctttaccaagtttcttttggttttgattaaagtgttcttatttcttatgtaaagtgttgtatatataagcctttatatataaga |
199 |
Q |
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| T |
18790491 |
ataacaattatatattctttatcaagtttcttttggttttgattaaagtgttcttatttcttatgtaaagtgttgtatatataagcctttatatataaga |
18790590 |
T |
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| Q |
200 |
ccaaattcctgaagctgagaatgatattagggttcattatagtatttcattagttttgtg |
259 |
Q |
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| T |
18790591 |
ccagactcctgaagctgagaaagatattagggttcattatagtatttcattagttttgtg |
18790650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 259
Target Start/End: Original strand, 18781754 - 18781980
Alignment:
| Q |
15 |
aaaaatgctggagacacttacatgcggcaatggtagctagaatgacaaggatattaaacaagtttgagaagtggtttgccatttgataacaattatatat |
114 |
Q |
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| T |
18781754 |
aaaaatgttgcagacacttacccgcggcaatggtagctaggatgacaaggaaattaaaccagattgagaagtggtttgccatttgataacaat------- |
18781846 |
T |
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| Q |
115 |
tctttaccaagtttcttttggttttgattaaagtgttcttatttcttatgtaaagtgttgtatatataagcctttatatataagaccaaattcctgaagc |
214 |
Q |
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| T |
18781847 |
--tttaccaagtttcttttgg-tttgat---agtgttcttatggtgaatctaaagtgttgtatctataagcctt----tataagaccagactactgatgt |
18781936 |
T |
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| Q |
215 |
tgagaatgatattagggttcattatagtatttcattagttttgtg |
259 |
Q |
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| T |
18781937 |
tgagagtgata-taccgttcaatatagtatttcattaattttgtg |
18781980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 18816945 - 18816861
Alignment:
| Q |
15 |
aaaaatgctggagacacttacatgcggcaatggtagctagaatgacaaggatattaaacaagtttgagaagtggtttgccatttg |
99 |
Q |
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| T |
18816945 |
aaaaatgttggaaacacttacacattgcaatggtagctagaatgagaaggagattaaaccagtttgagaagtggtttgccatttg |
18816861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 18775888 - 18775985
Alignment:
| Q |
13 |
ataaaaatgctggagacacttacatgcggcaatggtagctagaatgacaaggatattaaacaagtttgagaagtggtttgccatttgataacaattat |
110 |
Q |
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| T |
18775888 |
ataaaaatgctggagacatttacctgaagcaaaggtagctaggatgacaaggagattaatacagtttgagatgtggtttgccatttcacaacaattat |
18775985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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