View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3445_low_14 (Length: 270)
Name: NF3445_low_14
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3445_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 52073711 - 52073951
Alignment:
| Q |
16 |
atcccaatacctacacattcaattgaaagataaaattcagattccatcttaaaaagggatagttccctctaatttttgcacaatcagtatatttt--ttc |
113 |
Q |
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| T |
52073711 |
atcccaatacctacacattcaattgaaagataaaattcagattccatcttaaaaagggatagttccctctaatttttgcacaatcagtatattttttttc |
52073810 |
T |
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| Q |
114 |
tttcaaaaatgttggcacggccaagcaaatttgatttgtcgaccaaattgccaaatcatgacttacctacttaccagttaatttaacgattacattttca |
213 |
Q |
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| T |
52073811 |
tttcaaaaatgttggcacggccaagcaaatttgatttgtcgaccaaattgccaaatcatgacttacctacttaccagttaatttaacgattacattttca |
52073910 |
T |
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| Q |
214 |
aagaaagatagatgtgggtgtgaaagacagagagagaaatg |
254 |
Q |
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| T |
52073911 |
aagaaagatagatgtgggtgtgaaagacagagagagaaatg |
52073951 |
T |
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