View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3445_low_16 (Length: 263)
Name: NF3445_low_16
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3445_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 21 - 254
Target Start/End: Original strand, 39940856 - 39941089
Alignment:
| Q |
21 |
cagaacctcatcgacgtgacgtcgaaacctccgatgaacaacttgatgagatttccgttgaaaaggggtttgaaggaaaatctgttccttcgtggcagaa |
120 |
Q |
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| T |
39940856 |
cagaacctcatcgacgtgacgtcgaaacctccgatgaacaacttgatgagatttccattgaaaaagggtttgaaggaaaatctgttccttcgtggcagaa |
39940955 |
T |
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| Q |
121 |
acaggttacggttagggcaatagtagtgagtatcatgttatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctct |
220 |
Q |
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| T |
39940956 |
acaggttactgttagggcaatagtcgtgagtatcatgctatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctct |
39941055 |
T |
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| Q |
221 |
ttgaatgtttcggctgggttgttagggttcttct |
254 |
Q |
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| T |
39941056 |
ttgaatgtttcggctgggttgttagggttcttct |
39941089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 39956535 - 39956731
Alignment:
| Q |
19 |
ttcagaacctcatcgacgtgacgtcgaaacctccgatgaacaacttgatgagatttccgttgaaaaggggtttgaaggaaaatctgttccttcgtggcag |
118 |
Q |
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| T |
39956535 |
ttcagaacctcatcgacgtgacgtcgaaacctccgatgaacaacttgatgagatttccattgaaaaagggtttgaaggaaaatctgttccttcgtggcag |
39956634 |
T |
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| Q |
119 |
aaacaggttacggttagggcaatagtagtgagtatcatgttatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattc |
215 |
Q |
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| T |
39956635 |
aaacaggttacggctagggcaatagtcgtgagtatcatgctatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattc |
39956731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 53 - 254
Target Start/End: Complemental strand, 28750890 - 28750689
Alignment:
| Q |
53 |
gatgaacaacttgatgagatttccgttgaaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggttagggcaatagtagtgagta |
152 |
Q |
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||||||||||| || |||||||| || ||||| ||||||||||||| |||||||||| |||||||||||||||| || |||||||||||| | | |||| |
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| T |
28750890 |
gatgaacaactcgaggagatttctgtggaaaaagggtttgaaggaacatctgttcctacgtggcagaaacaggtcactgttagggcaatatttgcgagtc |
28750791 |
T |
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| Q |
153 |
tcatgttatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttagggttctt |
252 |
Q |
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| T |
28750790 |
tcatgttgtcggtgatgttcacgtttatcgtgatgaagttgaatctcacaactgggattattccttcgttgaatgtttctgctggattgttagggttttt |
28750691 |
T |
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| Q |
253 |
ct |
254 |
Q |
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|| |
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| T |
28750690 |
ct |
28750689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 78 - 254
Target Start/End: Complemental strand, 28742020 - 28741844
Alignment:
| Q |
78 |
ttgaaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggttagggcaatagtagtgagtatcatgttatcagtgatgttcacttt |
177 |
Q |
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||||||| ||||||||||||||| ||||||| |||||||||| |||||||| ||||||||| || | |||||| ||||||| || || |||||||| || |
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| T |
28742020 |
ttgaaaaagggtttgaaggaaaacttgttcctacgtggcagaagcaggttactgttagggcattattcgtgagtctcatgttgtcggtaatgttcacgtt |
28741921 |
T |
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| Q |
178 |
cattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttagggttcttct |
254 |
Q |
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| T |
28741920 |
cattgtgatgaaactgaatctcacaactgggattattccttctttgaatgtttcagctgggttgttagggtttttct |
28741844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 246
Target Start/End: Complemental strand, 7963852 - 7963656
Alignment:
| Q |
52 |
cgatgaacaacttgatgagatttccgttgaaaaggggtttgaaggaaaa-tctgttccttcgtggcagaaacaggttacggttagggcaatagtagtgag |
150 |
Q |
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|||||||||| | || ||||||| || ||||| | ||||||||||||| || ||||| ||||||||| | |||| ||||||| | ||| | ||||| |
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| T |
7963852 |
cgatgaacaattagaggagatttatgtggaaaaagtgtttgaaggaaaaatcaattcctatatggcagaaaaatgttatggttaggcctatattcgtgag |
7963753 |
T |
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| Q |
151 |
tatcatgtta-tcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttagg |
246 |
Q |
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| T |
7963752 |
tctcatgttggtcgatgatgttcacattcatcatgatgaatctgaatctcacaactgggattattcattcgttgaatgtttttgctgggttgttagg |
7963656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 236
Target Start/End: Complemental strand, 7961298 - 7961143
Alignment:
| Q |
81 |
aaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggttagggcaatagtagtgagtatcatgttatcagtgatgttcactttcat |
180 |
Q |
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|||| ||||||||||||||||| |||||| |||||| || | || ||||||| ||| ||| | |||||| || | || | || |||||||| ||||| |
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| T |
7961298 |
aaaaagggtttgaaggaaaatcagttcctatgtggcaccaaaatgtcacggttatggctatattcgtgagtctcgttttgacggtaatgttcacattcat |
7961199 |
T |
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| Q |
181 |
tgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctg |
236 |
Q |
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| T |
7961198 |
cgtgatgaagctcaatctcacaactggaattattccttcattaaatgtttctgctg |
7961143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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