View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3445_low_18 (Length: 251)

Name: NF3445_low_18
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3445_low_18
NF3445_low_18
[»] chr7 (16 HSPs)
chr7 (1-237)||(22841328-22841564)
chr7 (1-237)||(22894648-22894873)
chr7 (20-75)||(22831865-22831920)
chr7 (25-97)||(22806128-22806200)
chr7 (30-97)||(22842992-22843059)
chr7 (27-97)||(22810473-22810543)
chr7 (172-237)||(22873813-22873878)
chr7 (12-75)||(22816039-22816100)
chr7 (20-72)||(22859206-22859258)
chr7 (19-77)||(22840893-22840951)
chr7 (172-213)||(22806031-22806072)
chr7 (172-213)||(22810360-22810401)
chr7 (172-213)||(22840773-22840814)
chr7 (20-88)||(22886327-22886395)
chr7 (182-221)||(22886204-22886243)
chr7 (27-75)||(22899060-22899106)
[»] chr1 (2 HSPs)
chr1 (12-97)||(21149810-21149895)
chr1 (175-213)||(21149975-21150014)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 22841564 - 22841328
Alignment:
Q  1 aaaaaactacgcttatttgaagaaattagacgacattgatgttttaatttcacatattcaatttagcatcaaacattcaatacgtaaacattgaaaatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22841564 aaaaaactacgcttatttgaagaaattagacgacattgatgttttaatttcacatattcaatttagcatcaaacattcaatacgtaaacattgaaaatgt 22841465  T
Q  101 gcacttgggaaaaaatatggtggttcaaatgtgcacaactattcaaatggtcccaaatgagttacacaaaaattcatttttactaaactaaatgagacat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22841464 gcacttgggaaaaaatatggtggttcaaatgtgcacaactattcaaatggtcccaaatgagttacacaaaaattcatttttactaaactaaatgagacat 22841365  T
Q  201 ttcttagtaggacccaaatgagatacgcaatattagt 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  22841364 ttcttagtaggacccaaatgagatacgcaatattagt 22841328  T

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Target: chr7; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 22894873 - 22894648
Alignment:
Q  1 aaaaaactacgcttatttgaagaaattagacgacattgatgttttaatttcacatattcaatttagcatcaaacattcaatacgtaaacattgaaaatgt 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22894873 aaaaaactatgcttatttgaagaaattagacgacattgatgttttaatttcacatattcaatttagcatcaaacactcaatacgtaaacattgaaaatgt 22894774  T
Q  101 gcacttgggaaaaaatatggtggttcaaatgtgcacaactattcaaatggtcccaaatgagttacacaaaaattcatttttactaaactaaatgagacat 200  Q
    ||| |||||||||||  |||| |||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||    
T  22894773 gcagttgggaaaaaaattggtagttcaaatgtgcacaactattcaaatggtcccaaatgag-----------ttcatttttactaaactaaatgagacat 22894685  T
Q  201 ttcttagtaggacccaaatgagatacgcaatattagt 237  Q
    |||||||||||||||||||||||||||| || |||||    
T  22894684 ttcttagtaggacccaaatgagatacgcgattttagt 22894648  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 22831920 - 22831865
Alignment:
Q  20 aagaaattagacgacattgatgttttaatttcacatattcaatttagcatcaaaca 75  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22831920 aagaatttagacgacattgatgttttaatttcacacattcaatttagcatcaaaca 22831865  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 22806200 - 22806128
Alignment:
Q  25 attagacgacattgatgttttaatttcacatattcaatttagcatcaaacattcaatacgtaaacattgaaaa 97  Q
    ||||||| ||| |||||| || ||||||||||||||||||||||||||||| | |||| ||||||||||||||    
T  22806200 attagacaacactgatgtcttgatttcacatattcaatttagcatcaaacacttaatatgtaaacattgaaaa 22806128  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 22843059 - 22842992
Alignment:
Q  30 acgacattgatgttttaatttcacatattcaatttagcatcaaacattcaatacgtaaacattgaaaa 97  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||| | |||| ||||| ||||||||    
T  22843059 acgacatagatgttttgatttcacatattcaatttagcatcaaacacttaatatgtaaaaattgaaaa 22842992  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 22810543 - 22810473
Alignment:
Q  27 tagacgacattgatgttttaatttcacatattcaatttagcatcaaacattcaatacgtaaacattgaaaa 97  Q
    |||||||| |||||| |||||||||||||||||||||||||||| |||| | |||| |||||| |||||||    
T  22810543 tagacgactttgatgatttaatttcacatattcaatttagcatcgaacacttaatatgtaaacgttgaaaa 22810473  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 22873878 - 22873813
Alignment:
Q  172 attcatttttactaaactaaatgagacatttcttagtaggacccaaatgagatacgcaatattagt 237  Q
    ||||||||| | || ||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  22873878 attcattttcagtatactaaatgagacatttcttagtaggacccaaatgagaaatgcaattttagt 22873813  T

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Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 22816100 - 22816039
Alignment:
Q  12 cttatttgaagaaattagacgacattgatgttttaatttcacatattcaatttagcatcaaaca 75  Q
    ||||||| ||||||||||| |||| ||||||||||||||  |||||||||||||||||||||||    
T  22816100 cttattttaagaaattagatgacactgatgttttaattt--catattcaatttagcatcaaaca 22816039  T

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Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 22859258 - 22859206
Alignment:
Q  20 aagaaattagacgacattgatgttttaatttcacatattcaatttagcatcaa 72  Q
    |||||||||||| ||||| |||||||||||||||||||||||||| |||||||    
T  22859258 aagaaattagacaacattaatgttttaatttcacatattcaattttgcatcaa 22859206  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 22840951 - 22840893
Alignment:
Q  19 gaagaaattagacgacattgatgttttaatttcacatattcaatttagcatcaaacatt 77  Q
    ||||||||||||  |||||||||||||||||||| ||||||| ||| ||||||||||||    
T  22840951 gaagaaattagaaaacattgatgttttaatttcatatattcatttttgcatcaaacatt 22840893  T

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Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 22806072 - 22806031
Alignment:
Q  172 attcatttttactaaactaaatgagacatttcttagtaggac 213  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  22806072 attcatttttactaaactaaatgagatatttcttagtaggac 22806031  T

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Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 22810401 - 22810360
Alignment:
Q  172 attcatttttactaaactaaatgagacatttcttagtaggac 213  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  22810401 attcatttttactaaactaaatgagacatttcttagttggac 22810360  T

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Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 22840814 - 22840773
Alignment:
Q  172 attcatttttactaaactaaatgagacatttcttagtaggac 213  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  22840814 attcatttttactaaactaaatgagacatttcttagttggac 22840773  T

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Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 22886395 - 22886327
Alignment:
Q  20 aagaaattagacgacattgatgttttaatttcacatattcaatttagcatcaaacattcaatacgtaaa 88  Q
    |||||||||||  ||||||||  || |||||||||||||||||||||||||||||| | |||| |||||    
T  22886395 aagaaattagaacacattgataattaaatttcacatattcaatttagcatcaaacacttaatatgtaaa 22886327  T

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Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 22886243 - 22886204
Alignment:
Q  182 actaaactaaatgagacatttcttagtaggacccaaatga 221  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  22886243 actaaactaaatgagacatttcttagtaggacccagatga 22886204  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 22899106 - 22899060
Alignment:
Q  27 tagacgacattgatgttttaatttcacatattcaatttagcatcaaaca 75  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||||||||    
T  22899106 tagatgacattgatgttt-aatttcacatattcaatttag-atcaaaca 22899060  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 21149810 - 21149895
Alignment:
Q  12 cttatttgaagaaattagacgacattgatgttttaatttcacatattcaatttagcatcaaacattcaatacgtaaacattgaaaa 97  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||    
T  21149810 cttatttttagaaattagacgacattgatgttttaatttcacatattcaatttagcatcaaacacttaacacgtaaacattgaaaa 21149895  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 21149975 - 21150014
Alignment:
Q  175 catttttactaaactaaatgagac-atttcttagtaggac 213  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  21149975 catttttactaaactaaatgagacaatttcttagtaggac 21150014  T

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