View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3445_low_20 (Length: 237)
Name: NF3445_low_20
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3445_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 22034830 - 22035051
Alignment:
| Q |
1 |
aaatcaactctcaactcttaaactcgaacggtggtttaaccttgtttgcaccaaacgacaattccttttcaagtctcaaacctggcttcctcaattcgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22034830 |
aaatcaactctcaactcttaaactcgaacggtggtttaaccttgtttgcaccaaacgacaattccttttcaagtctcaaacccggcttcctcaattcgct |
22034929 |
T |
|
| Q |
101 |
tagcgatgaacaaaagaacaagctcatccaattccacttgctacctacatttgtatccatgtcaaattttgatactttgagcaacccggtgagaacacag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22034930 |
tagcgatgaacaaaagaacaagctcatccaattccacttgctacctacatttgtatccatgtcaaattttgatactttgagcaacccggtgagaacacag |
22035029 |
T |
|
| Q |
201 |
gctggcgatgacccttataggt |
222 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
22035030 |
gctggtgatgacccttataggt |
22035051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 211
Target Start/End: Complemental strand, 40050822 - 40050656
Alignment:
| Q |
45 |
tttgcaccaaacgacaattccttttcaagtctcaaacctggcttcctcaattcgcttagcgatgaacaaaagaacaagctcatccaattccacttgctac |
144 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||| || |||||||| |||| ||| |||||||||| |||| || |||||||| |||| |
|
|
| T |
40050822 |
tttgcaccaaatgacaattccttttcaaccctcaaacctggttttctcaattcccttaatgatcaacaaaagaatgagcttattcaattccatgaactac |
40050723 |
T |
|
| Q |
145 |
ctacatttgtatccatgtcaaattttgatactttgagcaacccggtgagaacacaggctggcgatga |
211 |
Q |
| |
|
| ||||||| | | ||||||||||||||||| |||||||| || |||||||| ||||| ||||| |
|
|
| T |
40050722 |
cctcatttgttgcactctcaaattttgatactttaagcaacccagttagaacacaagctggtgatga |
40050656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University