View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3445_low_4 (Length: 518)
Name: NF3445_low_4
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3445_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Original strand, 36007347 - 36007845
Alignment:
| Q |
1 |
acattttgcttgtgatgtgctatatatactgctctatgaaagaaaatactacagcatattcgctttggtttgtacagacaaggttcattatgttactatt |
100 |
Q |
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| T |
36007347 |
acattttgcttgtgatgtgctatatatactgctctatgaaagaaaatactacagcatattcgctttggtttgtacagacaaggttcattatgttactatt |
36007446 |
T |
|
| Q |
101 |
atcaatgaatatcaaacaattaattgacccaaaatttatatatgctaaaactagaagcagagccaggattttggaattggattatgcgctcatttaactg |
200 |
Q |
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| T |
36007447 |
atcaatgaaaatcaaacaattaattgacccaaaatttatatatgctaaaactagaagcagagccaggattttggaattggattatgcgctcatttaactg |
36007546 |
T |
|
| Q |
201 |
tgttagaaagaaagcgacattgatgaattaacaatactcaacttaaggctcatttgggtccaaagatgatatttttcaaaatttgatttgcataggtgca |
300 |
Q |
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| T |
36007547 |
tgttagaaagaaagcgacattgatgaatt---aatactcaacttaaggctcatttgggtccaaagatgatatttgtcaaaatttgatttgcataggtgca |
36007643 |
T |
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| Q |
301 |
ataatatcggtgttcaacatttatgcccgtaaaacttgatttaagtgacaatattgaaattgagttgggtctttgatcaaatacaactt-nnnnnnnnnt |
399 |
Q |
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| T |
36007644 |
ataatatcggtgttcaacatttatgcccgtaaaacttgatttaagtgacaatattgaaattgagttgggtctttgatcaaatacaacttaaaaaaaaaaa |
36007743 |
T |
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| Q |
400 |
ttgacaatgttgaaattgttaagctggagttttgttgacaatgtttaccaatatttacaaaaatttattcatcaaaatagttatgatagcacatgtacat |
499 |
Q |
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| T |
36007744 |
ttgacaatgttgaaattgttaagctggagttttgttgacaatgtttaccaatattttcaaaaatttattcatcaaaatagttatgatagcacatgtacat |
36007843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 160
Target Start/End: Original strand, 36013199 - 36013355
Alignment:
| Q |
4 |
ttttgcttgtgatgtgctatatatactgctctatgaaagaaaatactacagcatattcgctttggtttgtacag-acaaggttcattatgttactattat |
102 |
Q |
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||||||||||| ||| ||||||||||| | |||||||||| |||||||||| |||||||||||| ||||||| ||| ||| |||||||| | | | |
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| T |
36013199 |
ttttgcttgtgttgttgtatatatactgttatatgaaagaagatactacagcttattcgctttgg-ctgtacagtgcaaagtttgttatgttattgtcaa |
36013297 |
T |
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| Q |
103 |
caatgaatatcaaacaattaattgacccaaaatttatatatgctaaaactagaagcag |
160 |
Q |
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| T |
36013298 |
caatgaatatcaaacaacaaattgacctaaaagttgtttatgctgaaactagaagcag |
36013355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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