View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3445_low_5 (Length: 406)
Name: NF3445_low_5
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3445_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 361
Target Start/End: Original strand, 51768230 - 51768582
Alignment:
| Q |
9 |
gaatatgtgggcaggaaggcaaaacagtgatgaagttgagagattactacgagaatatcaatagtacttcaaatttattaactacttaagatgctttcct |
108 |
Q |
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| T |
51768230 |
gaatatgtgggcaggaaggcaaaacagtgatgaagttgagagattactacgagaatatcaatagtacttcaaatttattaactacttaagatgctttcct |
51768329 |
T |
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| Q |
109 |
tttagctttgttctcaata--gagtatttgaattattatgacagctgaaatttggtttacaagggatatgctaaaacatatgcacacctgtagcttttct |
206 |
Q |
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| T |
51768330 |
tttagctttgttctcaatattgagtatttgaatta---tgacagctgaaatttggtttacaagggatatgctaaaacatatgcacacctgtagcttttct |
51768426 |
T |
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| Q |
207 |
aaatcttaatcactatgaacatgaaaccatatgctaaagtgggaatccatgttgtgcatgatggaaattggaaaagttttaaaca-ttttgtcacttcaa |
305 |
Q |
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| T |
51768427 |
aaatcttaatcactatgaacatgaaaccatatactaaagtgggaatccatgctgtgcgtgatgaaaattggaaaagttttaaacatttttgtcacttcaa |
51768526 |
T |
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| Q |
306 |
gatatggtcattttgtcacatatgcaagtctctcagtattgagaaatacatcttat |
361 |
Q |
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| T |
51768527 |
gatatagtcattttgtcacatatgcaagtctctcagtattgagaaatacatcttat |
51768582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 391
Target Start/End: Original strand, 51768677 - 51768709
Alignment:
| Q |
359 |
tataaatttcagtcttccaatatagtgccttat |
391 |
Q |
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| T |
51768677 |
tataaatttcagtcttccaatatagtgccttat |
51768709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 6422737 - 6422688
Alignment:
| Q |
240 |
ctaaagtgggaatccatgttgtgcatgatggaaattggaaaagttttaaa |
289 |
Q |
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| T |
6422737 |
ctaaaatgggaatccatgttctgcatcatggaaatttgaaaagctttaaa |
6422688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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