View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3445_low_6 (Length: 384)
Name: NF3445_low_6
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3445_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 8e-74; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 2019496 - 2019652
Alignment:
| Q |
1 |
aaatgctaacaatggatattaaatctcaaaacaccatagccaacaatatgccatcaaatgaaggtggtcccaggaataatctgcccgatcaaggtaagca |
100 |
Q |
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| T |
2019496 |
aaatgctaacaatggagattaaatctcaaaacaccatggccaacaatatgccatcaaatgaaggtggtcccaggaataatctgcccgatcaaggtaagca |
2019595 |
T |
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| Q |
101 |
tgtgttttctggggaattggtggttgt-ttcgggtatgataccaaagttggcaaatc |
156 |
Q |
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| T |
2019596 |
tgtgttttctggggaattggtggttgtattcgggtatgataccaaagttggcaaatc |
2019652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 220 - 366
Target Start/End: Original strand, 2019716 - 2019858
Alignment:
| Q |
220 |
ccaaagatgcttatttaaatattggggcatttgcaaagtattagcagaaattgagtgaagccttattttgttacttaaacttggtaacatgttagcatag |
319 |
Q |
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| T |
2019716 |
ccaaagatgcttatttaaatattagggcatttgcaaagtattagcagaaattgagtgaagccttattttgttacttaaacttggtaacatgttagcatag |
2019815 |
T |
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| Q |
320 |
ggaatttgttaatgaactaaattttgaaacattatattggaaatggt |
366 |
Q |
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| T |
2019816 |
ggaatttgttaatgaactaaattttgaaa----atattggaaatggt |
2019858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 2036225 - 2036381
Alignment:
| Q |
1 |
aaatgctaacaatggatattaaatctcaaaacaccatagccaacaatatgccatcaaatgaaggtggtcccaggaataatctgcccgatcaaggtaagca |
100 |
Q |
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| T |
2036225 |
aaatgctaacaatggagaataaatctcaaaacaccatggccaacaatatgctatcaaatgaaggtggtcccagcaataatctgcccgatcaaggtaagca |
2036324 |
T |
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| Q |
101 |
tgtgttttctggggaattggtggttgt-ttcgggtatgataccaaagttggcaaatc |
156 |
Q |
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| T |
2036325 |
tattttttctagggaattggtggttgtaatcgggtatgataccaaagttggcaaatc |
2036381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 1990530 - 1990686
Alignment:
| Q |
1 |
aaatgctaacaatggatattaaatctcaaaacaccatagccaacaatatgccatcaaatgaaggtggtcccaggaataatctgcccgatcaaggtaagca |
100 |
Q |
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| T |
1990530 |
aaatggtaacaatggagaataaatctcaaaacaccatggccaacaatttgccatcaaatgaaggtggtcccagaaataatctgcccggtcaaggtaagca |
1990629 |
T |
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| Q |
101 |
tgtgttttctggggaattggtggttgt-ttcgggtatgataccaaagttggcaaatc |
156 |
Q |
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| T |
1990630 |
tatgttttctagggaattggtggttgtattcatgtatgataccaaagttggcaaatc |
1990686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 2036519 - 2036574
Alignment:
| Q |
301 |
tggtaacatgttagcatagggaatttgttaatgaactaaattttgaaacattatat |
356 |
Q |
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| T |
2036519 |
tggtaatatgttagcatagggaatttgttaatgaactaaattttgaaacattatat |
2036574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 1990745 - 1990805
Alignment:
| Q |
241 |
ttggggcatttgcaaagtattagcagaaattgagtgaagccttattttgttacttaaactt |
301 |
Q |
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| T |
1990745 |
ttggggcatttgcaaagaactagcagaaactgagtgtagccttattttgttacttaaactt |
1990805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 317 - 367
Target Start/End: Original strand, 1994504 - 1994554
Alignment:
| Q |
317 |
tagggaatttgttaatgaactaaattttgaaacattatattggaaatggtg |
367 |
Q |
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| T |
1994504 |
tagggaatgtgttaatgaactaaatattgaaacattatattggaaatggtg |
1994554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 2036408 - 2036447
Alignment:
| Q |
220 |
ccaaagatgcttatttaaatattggggcatttgcaaagta |
259 |
Q |
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| T |
2036408 |
ccaaagatgcttatttaaatattagggcatttgcaaagta |
2036447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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