View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3445_low_8 (Length: 315)
Name: NF3445_low_8
Description: NF3445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3445_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 15285291 - 15285576
Alignment:
| Q |
19 |
acaacatgcctaatgaatcagtgagtccatgtttaaaactgaggagtatttgtttgtcttttatgttgcaagaagcatttgtctgacatattattatatt |
118 |
Q |
| |
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| T |
15285291 |
acaacatgcctaatgaatcagtgagtccatgtttaaaactgaggagtatttgtttgtcttttatgttgcaagaagcatttgtctgacatattattatatt |
15285390 |
T |
|
| Q |
119 |
taatatgattaaaactgaaaataatagagagaggggtgcattttgggaggagaaagatctcaccatgttatgagtagatacgaaggtttaagatattgta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15285391 |
taatatgattaaaactgaaaataatagagagaggggtgcattttgggaggagaaagatctcaccatgttatgagtagatacgaaggtttaagatattgta |
15285490 |
T |
|
| Q |
219 |
attagttacgttggatgcatgatatatagatagatacaggtggcacatatggagtatcaattgggttataacgaccttggcttcat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
15285491 |
attagttacgttggatgcatgatatatagatagatacaggtggcacatatggagtatcaattgggttataacaaccttgggttcat |
15285576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 15465660 - 15465945
Alignment:
| Q |
19 |
acaacatgcctaatgaatcagtgagtccatgtttaaaactgaggagtatttgtttgtcttttatgttgcaagaagcatttgtctgacatattattatatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15465660 |
acaacatgcctaatgaatcagtgagtccatgtttaaaactgaggagtatttgtttgtcttttatgttgcaagaagcatttgtctgacatattattatatt |
15465759 |
T |
|
| Q |
119 |
taatatgattaaaactgaaaataatagagagaggggtgcattttgggaggagaaagatctcaccatgttatgagtagatacgaaggtttaagatattgta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15465760 |
taatatgattaaaactgaaaataatagagagaggggtgcattttgggaggagaaagatctcaccatgttatgagtagatacgaaggtttaagatattgta |
15465859 |
T |
|
| Q |
219 |
attagttacgttggatgcatgatatatagatagatacaggtggcacatatggagtatcaattgggttataacgaccttggcttcat |
304 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
15465860 |
attagttacgttggatgcatgatatatagatagatacaggtggcacatatggagtatcaattgggttataacaaccttgggttcat |
15465945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 20 - 302
Target Start/End: Original strand, 15314681 - 15314952
Alignment:
| Q |
20 |
caacatgcctaatgaatcagtgagtccatgtttaaaactgaggagtatttgtttgtcttttatgttgcaagaagcatttgtctgacatattattatattt |
119 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| |
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| T |
15314681 |
caacatgcctaatggatcaatgagtccatgtttaaaacaaaggagtatttgtttgtctttttggttgcaagaagcatttgtctcacatattactatattt |
15314780 |
T |
|
| Q |
120 |
aatatgattaaaactgaaaataatagagagaggggtgcattttgggaggagaaagatctcaccatgttatgagtagatacgaaggtttaagatattgtaa |
219 |
Q |
| |
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||||| |||| || ||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| | |||||| ||||||||||||||||||| |
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| T |
15314781 |
aatattattataaatgaaaataatagagagaatggtgcattttgggaggagataaatctcaccatgttatcactagatataaaggtttaagatattgtaa |
15314880 |
T |
|
| Q |
220 |
ttagt-tacgttggatgcatgatatatagatagatacaggtggcacatatggagtatcaattgggttataacgaccttggcttc |
302 |
Q |
| |
|
||||| ||| |||||||| | |||||| |||||||||||||||||| ||| |||||| |||||||||||||||| |
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|
| T |
15314881 |
ttagtctaccttggatgccttatatat----------aggtggcacatatggagtgtcagttgggt--taacgaccttggcttc |
15314952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 20 - 302
Target Start/End: Original strand, 15495050 - 15495321
Alignment:
| Q |
20 |
caacatgcctaatgaatcagtgagtccatgtttaaaactgaggagtatttgtttgtcttttatgttgcaagaagcatttgtctgacatattattatattt |
119 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| |
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| T |
15495050 |
caacatgcctaatggatcaatgagtccatgtttaaaacaaaggagtatttgtttgtctttttggttgcaagaagcatttgtctcacatattactatattt |
15495149 |
T |
|
| Q |
120 |
aatatgattaaaactgaaaataatagagagaggggtgcattttgggaggagaaagatctcaccatgttatgagtagatacgaaggtttaagatattgtaa |
219 |
Q |
| |
|
||||| |||| || ||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| | |||||| ||||||||||||||||||| |
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| T |
15495150 |
aatattattataaatgaaaataatagagagaatggtgcattttgggaggagataaatctcaccatgttatcactagatataaaggtttaagatattgtaa |
15495249 |
T |
|
| Q |
220 |
ttagt-tacgttggatgcatgatatatagatagatacaggtggcacatatggagtatcaattgggttataacgaccttggcttc |
302 |
Q |
| |
|
||||| ||| |||||||| | |||||| |||||||||||||||||| ||| |||||| |||||||||||||||| |
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|
| T |
15495250 |
ttagtctaccttggatgccttatatat----------aggtggcacatatggagtgtcagttgggt--taacgaccttggcttc |
15495321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 15303807 - 15304042
Alignment:
| Q |
20 |
caacatgcctaatgaatcagtgagtccatgtttaaaactgaggagtatttgtttgtcttttatgttgcaagaagcatttgtctgacatatta------tt |
113 |
Q |
| |
|
|||||||||||||| |||| ||| |||||||||||||| ||| |||||||||||||||||| ||||||||||| |||||||| |||||||| || |
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| T |
15303807 |
caacatgcctaatggatcaatgattccatgtttaaaacagagaagtatttgtttgtctttttggttgcaagaagtatttgtctcacatattactatattt |
15303906 |
T |
|
| Q |
114 |
atatttaatatgattaaaactgaaaataatagagagaggggtgcattttgggaggagaaagatctcaccatgt--tatgagtagatacgaaggtttaaga |
211 |
Q |
| |
|
|||||||||||||||| || |||||| ||||||||||||||||||||||| ||||||| | |||||||||||| ||| | |||||| ||||||||| || |
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|
| T |
15303907 |
atatttaatatgattacaaatgaaaacaatagagagaggggtgcattttgagaggagataaatctcaccatgttatatcactagatatgaaggtttatga |
15304006 |
T |
|
| Q |
212 |
tattgtaattagt-tacgttggatgcatgatatata |
246 |
Q |
| |
|
||||||||||||| ||| || ||||||| ||||||| |
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|
| T |
15304007 |
tattgtaattagtctaccttagatgcatcatatata |
15304042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 15484176 - 15484411
Alignment:
| Q |
20 |
caacatgcctaatgaatcagtgagtccatgtttaaaactgaggagtatttgtttgtcttttatgttgcaagaagcatttgtctgacatatta------tt |
113 |
Q |
| |
|
|||||||||||||| |||| ||| |||||||||||||| ||| |||||||||||||||||| ||||||||||| |||||||| |||||||| || |
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|
| T |
15484176 |
caacatgcctaatggatcaatgattccatgtttaaaacagagaagtatttgtttgtctttttggttgcaagaagtatttgtctcacatattactatattt |
15484275 |
T |
|
| Q |
114 |
atatttaatatgattaaaactgaaaataatagagagaggggtgcattttgggaggagaaagatctcaccatgt--tatgagtagatacgaaggtttaaga |
211 |
Q |
| |
|
|||||||||||||||| || |||||| ||||||||||||||||||||||| ||||||| | |||||||||||| ||| | |||||| ||||||||| || |
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|
| T |
15484276 |
atatttaatatgattacaaatgaaaacaatagagagaggggtgcattttgagaggagataaatctcaccatgttatatcactagatatgaaggtttatga |
15484375 |
T |
|
| Q |
212 |
tattgtaattagt-tacgttggatgcatgatatata |
246 |
Q |
| |
|
||||||||||||| ||| || ||||||| ||||||| |
|
|
| T |
15484376 |
tattgtaattagtctaccttagatgcatcatatata |
15484411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 15447522 - 15447662
Alignment:
| Q |
20 |
caacatgcctaatgaatcagtgagtccatgtttaaaactgaggagtatttgtttgtcttttatgttgcaagaagcatttgtctgacatattattatattt |
119 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||| |
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| T |
15447522 |
caacatgcctaatggatcaatgagtccatgtgtaaaagagaggagtatttgtttgtctttttggttgcaagaagcatttatctcacatattactatatta |
15447621 |
T |
|
| Q |
120 |
aatatgattaaaactgaaaataatagagagaggggtgcatt |
160 |
Q |
| |
|
|||||| || || ||| | ||||||||| || |||||||| |
|
|
| T |
15447622 |
tatatgaatacaaatgatagtaatagagaaagtggtgcatt |
15447662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 18064081 - 18064234
Alignment:
| Q |
19 |
acaacatgcctaatgaatcagtgagtccatgtttaaaactgaggagtatttgtttgtcttttatgttgcaagaagcatttgtctgacatattattatatt |
118 |
Q |
| |
|
|||||||| ||||||| || ||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| || |||||| ||| || |
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|
| T |
18064081 |
acaacatgtctaatgagtcggtgagtccatgtttaaaacaaaggagtatttgtttgtccttttggttgcaagaagcatttgcatggcatattgctatttt |
18064180 |
T |
|
| Q |
119 |
taatatgattaaaactgaaaataatagagagaggggtgcattttgggaggagaa |
172 |
Q |
| |
|
||| |||| || ||| ||||||||| | || |||||| ||||||| ||||| |
|
|
| T |
18064181 |
gcatacaattataaatgacaataatagaaaaagtggtgcactttgggaagagaa |
18064234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 153 - 302
Target Start/End: Original strand, 15298622 - 15298761
Alignment:
| Q |
153 |
ggtgcattttgggaggagaaagatctcacca-tgttatgagtagatacgaaggtttaagatattgtaattagt-tacgttggatgcatgatatatagata |
250 |
Q |
| |
|
|||||||||||| |||||| | |||| |||| |||||| | |||||| ||||||||||||||||||||||||| ||| ||| |||||| |||||| |
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|
| T |
15298622 |
ggtgcattttggaaggagataaatctgaccaatgttatcactagatatgaaggtttaagatattgtaattagtctaccttgaatgcattatatat----- |
15298716 |
T |
|
| Q |
251 |
gatacaggtggcacatatggagtatcaattgggttataacgaccttggcttc |
302 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
15298717 |
-----aggtggcacatatggagtgtcagttgggt--taacgaccttggcttc |
15298761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 153 - 302
Target Start/End: Original strand, 15478991 - 15479130
Alignment:
| Q |
153 |
ggtgcattttgggaggagaaagatctcacca-tgttatgagtagatacgaaggtttaagatattgtaattagt-tacgttggatgcatgatatatagata |
250 |
Q |
| |
|
|||||||||||| |||||| | |||| |||| |||||| | |||||| ||||||||||||||||||||||||| ||| ||| |||||| |||||| |
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|
| T |
15478991 |
ggtgcattttggaaggagataaatctgaccaatgttatcactagatatgaaggtttaagatattgtaattagtctaccttgaatgcattatatat----- |
15479085 |
T |
|
| Q |
251 |
gatacaggtggcacatatggagtatcaattgggttataacgaccttggcttc |
302 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||||||||||||||| |
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|
| T |
15479086 |
-----aggtggcacatatggagtgtcagttgggt--taacgaccttggcttc |
15479130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Original strand, 15447665 - 15447694
Alignment:
| Q |
257 |
ggtggcacatatggagtatcaattgggtta |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
15447665 |
ggtggcacatatggagtatcaattgggtta |
15447694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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