View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3446_high_1 (Length: 850)

Name: NF3446_high_1
Description: NF3446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3446_high_1
NF3446_high_1
[»] chr3 (18 HSPs)
chr3 (375-650)||(11427105-11427380)
chr3 (692-835)||(11427422-11427573)
chr3 (517-643)||(11430984-11431110)
chr3 (55-150)||(31688156-31688252)
chr3 (51-150)||(31896611-31896711)
chr3 (51-150)||(31912320-31912420)
chr3 (51-150)||(31945968-31946068)
chr3 (288-367)||(19766009-19766088)
chr3 (318-373)||(11394007-11394062)
chr3 (266-351)||(31687881-31687966)
chr3 (177-217)||(31688056-31688096)
chr3 (318-362)||(46233973-46234017)
chr3 (177-217)||(31896771-31896811)
chr3 (177-217)||(31912480-31912520)
chr3 (79-118)||(952782-952821)
chr3 (305-368)||(52130783-52130846)
chr3 (692-749)||(11431159-11431216)
chr3 (146-179)||(52131084-52131117)
[»] chr1 (13 HSPs)
chr1 (17-220)||(7607950-7608155)
chr1 (17-220)||(31770938-31771143)
chr1 (244-362)||(31771310-31771428)
chr1 (240-362)||(7608318-7608440)
chr1 (215-308)||(7608224-7608317)
chr1 (215-308)||(31771212-31771305)
chr1 (305-362)||(1721556-1721613)
chr1 (305-372)||(17726023-17726089)
chr1 (318-363)||(32440659-32440704)
chr1 (305-363)||(22368196-22368254)
chr1 (467-516)||(5878780-5878828)
chr1 (23-60)||(14184848-14184885)
chr1 (467-516)||(5874891-5874939)
[»] scaffold0003 (5 HSPs)
scaffold0003 (51-179)||(36664-36794)
scaffold0003 (60-179)||(42852-42976)
scaffold0003 (266-362)||(36966-37062)
scaffold0003 (327-367)||(43199-43239)
scaffold0003 (178-217)||(36837-36876)
[»] chr6 (4 HSPs)
chr6 (60-179)||(27444385-27444509)
chr6 (328-373)||(31444760-31444805)
chr6 (327-367)||(27444122-27444162)
chr6 (320-368)||(33054175-33054223)
[»] scaffold0152 (1 HSPs)
scaffold0152 (266-362)||(10195-10291)
[»] chr2 (5 HSPs)
chr2 (305-376)||(997806-997877)
chr2 (288-363)||(4453777-4453852)
chr2 (318-363)||(9208569-9208614)
chr2 (328-367)||(7161811-7161850)
chr2 (309-372)||(3625169-3625234)
[»] chr4 (6 HSPs)
chr4 (305-372)||(32651267-32651334)
chr4 (288-372)||(38467690-38467775)
chr4 (17-60)||(41810334-41810377)
chr4 (288-360)||(3649873-3649945)
chr4 (307-370)||(41810163-41810226)
chr4 (327-362)||(26720237-26720272)
[»] scaffold0014 (1 HSPs)
scaffold0014 (327-369)||(32608-32650)
[»] chr8 (2 HSPs)
chr8 (288-362)||(44663663-44663737)
chr8 (288-362)||(35348991-35349066)
[»] chr7 (3 HSPs)
chr7 (318-367)||(16262692-16262741)
chr7 (320-362)||(21820186-21820228)
chr7 (483-516)||(20431259-20431292)


Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 375 - 650
Target Start/End: Original strand, 11427105 - 11427380
Alignment:
Q  375 attacctgattgcaaaatgtaattagttttgcatcttgatactatgaaaatgatgtatgctccctaaaatcagcttcaaattaaattagtggtcatcaca 474  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11427105 attacctgattgcaaaatataattagttttgcatcttgataccatgaaaatgatgtatgctccctaaaatcaccttcaaattaaattagtggtcatcaca 11427204  T
Q  475 caaagataaatattgaatcataccttatattattaattgtcaaagaaaacacgttaatcaaagaaattacattggaagcatcagtcgccaacgaggaaag 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||    
T  11427205 caaagataaatattgaatcataccttatattattaattgtcaaagaaaacacgttaatcaaagaaattacactcgaagcatcggtcgccaacgaggaaag 11427304  T
Q  575 aaaggacagagaaaagatcatccacaaccaaagcatgagaaaggtttcactgcagctccaacaaaagcagaagatt 650  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11427305 aaaggacagagaaaagatcatccacaaccaaagcatgagaaaggtttcactacagctccaacaaaagcagaagatt 11427380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 692 - 835
Target Start/End: Original strand, 11427422 - 11427573
Alignment:
Q  692 aggagaagcaacgcttagtggaatggtatacatacctgtaattaaacaatggtggatc--------gaattggcaaggaagcgataccaaagagaaaaaa 783  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||        ||||| ||||||||||||||||||||||||||      
T  11427422 aggagaagcaacgcttagtggaatcgtatacatacctgtaattaaacaatggtggatccatcgatcgaattagcaaggaagcgataccaaagagaaaatc 11427521  T
Q  784 tttgaacactattgacttgtaagacaatcgacttagaatcgttatattcaca 835  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11427522 tttgaacactattgacttgtaagacgatcgacttagaatcgttatattcaca 11427573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 517 - 643
Target Start/End: Original strand, 11430984 - 11431110
Alignment:
Q  517 aagaaaacacgttaatcaaagaaattacattggaagcatcagtcgccaacgaggaaagaaaggacagagaaaagatcatccacaaccaaagcatgagaaa 616  Q
    |||||||||||||||||||| |||||||| | ||||||||  |||||||| | |||| |||||||||||||||||||||||||||| |||||||||||||    
T  11430984 aagaaaacacgttaatcaaataaattacactcgaagcatcgatcgccaaccacgaaacaaaggacagagaaaagatcatccacaacaaaagcatgagaaa 11431083  T
Q  617 ggtttcactgcagctccaacaaaagca 643  Q
    ||||| ||||||| |||||||||||||    
T  11431084 ggttttactgcagttccaacaaaagca 11431110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 31688252 - 31688156
Alignment:
Q  55 gacgcggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattt--tgtgtttttgaagaaaatgaggaat 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||  ||||||||||||||| |||||||||    
T  31688252 gacgcggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaagaa-aagggattttgtgtgtttttgaagaagatgaggaat 31688156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 31896611 - 31896711
Alignment:
Q  51 ttccgacgcggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattt--tgtgtttttgaagaaaatgagga 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||  ||||||||||||||| |||||||    
T  31896611 ttccgacgcggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcaaaagaagaa-aagggattttgtgtgtttttgaagaagatgagga 31896709  T
Q  149 at 150  Q
    ||    
T  31896710 at 31896711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 31912320 - 31912420
Alignment:
Q  51 ttccgacgcggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattt--tgtgtttttgaagaaaatgagga 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||  ||||||||||||||| |||||||    
T  31912320 ttccgacgcggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcaaaagaagaa-aagggattttgtgtgtttttgaagaagatgagga 31912418  T
Q  149 at 150  Q
    ||    
T  31912419 at 31912420  T

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Target: chr3; HSP #7
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 31945968 - 31946068
Alignment:
Q  51 ttccgacgcggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattt--tgtgtttttgaagaaaatgagga 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||  ||||||||||||||| |||||||    
T  31945968 ttccgacgcggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcaaaagaagaa-aagggattttgtgtgtttttgaagaagatgagga 31946066  T
Q  149 at 150  Q
    ||    
T  31946067 at 31946068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 288 - 367
Target Start/End: Complemental strand, 19766088 - 19766009
Alignment:
Q  288 ttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagattagat 367  Q
    ||||| ||||||| || || ||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  19766088 ttggcgcctaaaaaagtaggattagggtttggagtgttaattggagtgttaactaggattagaaataagttagattagat 19766009  T

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Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 318 - 373
Target Start/End: Complemental strand, 11394062 - 11394007
Alignment:
Q  318 ggagtgttatttggagtgttaactaggattaggaataagttagattagattagata 373  Q
    |||||| || |||||||||||||||||||||| |||||||||||||||||||||||    
T  11394062 ggagtgataattggagtgttaactaggattagaaataagttagattagattagata 11394007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 266 - 351
Target Start/End: Complemental strand, 31687966 - 31687881
Alignment:
Q  266 tagatccaagggctgaggtttgtt-ggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattagga 351  Q
    |||||||||||||| ||| ||||| ||| ||||||| || |||||||||||| ||||||| | |||||||||||||||||| |||||    
T  31687966 tagatccaagggct-aggattgtttggcgcctaaaaaagtagaattagggtttggagtgtaagttggagtgttaactaggactagga 31687881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 31688096 - 31688056
Alignment:
Q  177 ttattggaaaccaataacattaattatttgtcatttacaat 217  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  31688096 ttattggaaaccgataacattaattatttgtcatttacaat 31688056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 46233973 - 46234017
Alignment:
Q  318 ggagtgttatttggagtgttaactaggattaggaataagttagat 362  Q
    |||||| || |||||||||||||||||||||||||||||||||||    
T  46233973 ggagtgataattggagtgttaactaggattaggaataagttagat 46234017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 31896771 - 31896811
Alignment:
Q  177 ttattggaaaccaataacattaattatttgtcatttacaat 217  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  31896771 ttattggaaatcgataacattaattatttgtcatttacaat 31896811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 31912480 - 31912520
Alignment:
Q  177 ttattggaaaccaataacattaattatttgtcatttacaat 217  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  31912480 ttattggaaatcgataacattaattatttgtcatttacaat 31912520  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 118
Target Start/End: Original strand, 952782 - 952821
Alignment:
Q  79 tttactttagagggtcgaaatgaaggcagaagaagaagaa 118  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  952782 tttactttagaggattgaaatgaaggcagaagaagaagaa 952821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 52130846 - 52130783
Alignment:
Q  305 agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagattagatt 368  Q
    ||||||||||||   |||| || ||||||||||| |||||||||| ||||||||||| ||||||    
T  52130846 agaattagggttttaagtggtaattggagtgttacctaggattagaaataagttagactagatt 52130783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 692 - 749
Target Start/End: Original strand, 11431159 - 11431216
Alignment:
Q  692 aggagaagcaacgcttagtggaatggtatacatacctgtaattaaacaatggtggatc 749  Q
    |||||||||| ||| |||||||||  ||| |||||||||| ||||| |||||||||||    
T  11431159 aggagaagcagcgcatagtggaatcatatgcatacctgtagttaaagaatggtggatc 11431216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 52131117 - 52131084
Alignment:
Q  146 ggaatcgtagagagatggagagaaaggagggtta 179  Q
    ||||||||||||||||||||||| ||||||||||    
T  52131117 ggaatcgtagagagatggagagagaggagggtta 52131084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 179; Significance: 4e-96; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 7607950 - 7608155
Alignment:
Q  17 acaataatggagaggtgtgataataacatcagttttccgacgcggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaagaag 116  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7607950 acaataatggagaggtgtgataataacagcagttttccgacacggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcaaaagaagaag 7608049  T
Q  117 aaaggattt--tgtgtttttgaagaaaatgaggaatcgtagagagatggagagaaaggagggttattggaaaccaataacattaattatttgtcatttac 214  Q
    |||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7608050 aaaggattttgtgtgtttttgaagaagatgaggaatcgtagagagatggagagaaaggagggttattggaaaccaataacattaattatttgtcatttac 7608149  T
Q  215 aataca 220  Q
    ||||||    
T  7608150 aataca 7608155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 31770938 - 31771143
Alignment:
Q  17 acaataatggagaggtgtgataataacatcagttttccgacgcggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaagaag 116  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31770938 acaataatggagaggtgtgataataacatcagttttccaacgcggtggtcaacgatgatgcatttactttagaaggtcgaaatgaaggcagaagaagaag 31771037  T
Q  117 aaaggattt--tgtgtttttgaagaaaatgaggaatcgtagagagatggagagaaaggagggttattggaaaccaataacattaattatttgtcatttac 214  Q
    ||| |||||  ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31771038 aaatgattttgtgtgtttttgaagaagatgaggaatcgtagagagatgaagagaaaggagggttattggaaaccaataacattaattatttgtcatttac 31771137  T
Q  215 aataca 220  Q
    ||||||    
T  31771138 aataca 31771143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 244 - 362
Target Start/End: Original strand, 31771310 - 31771428
Alignment:
Q  244 gaggaaaaaatggcaaacagattagatccaagggctgaggtttgttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactag 343  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31771310 gaggaaaaaattgcaaacagattagatccaagggctgaggtttgttggcgcctaaaacaggagaattagggttgggagtgttatttggagtgttaactag 31771409  T
Q  344 gattaggaataagttagat 362  Q
    |||||||||||||||||||    
T  31771410 gattaggaataagttagat 31771428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 240 - 362
Target Start/End: Original strand, 7608318 - 7608440
Alignment:
Q  240 aaaggaggaaaaaatggcaaacagattagatccaagggctgaggtttgttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaa 339  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  7608318 aaaggaggaaaaaattgcaaacagattagatccaagggctgagatttgttggcgcctaaaacaggagaattagggttgggagtgttatttggagttttaa 7608417  T
Q  340 ctaggattaggaataagttagat 362  Q
    |||||||||||||||||||||||    
T  7608418 ctaggattaggaataagttagat 7608440  T

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Target: chr1; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 215 - 308
Target Start/End: Original strand, 7608224 - 7608317
Alignment:
Q  215 aatacaattaattttgtcacgtaagaaaggaggaaaaaatggcaaacagattagatccaagggctgaggtttgttggcacctaaaataggagaa 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  7608224 aatacaattaattttgtcacgtaagaaaggaggaaaaaatggcaaacagattagatccaagggctgaggtttgttggcgcctaaaacaggagaa 7608317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 215 - 308
Target Start/End: Original strand, 31771212 - 31771305
Alignment:
Q  215 aatacaattaattttgtcacgtaagaaaggaggaaaaaatggcaaacagattagatccaagggctgaggtttgttggcacctaaaataggagaa 308  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  31771212 aatacaattaattttgtcacgtaagaaaggaggaaaaactggcaaacagattagatccaagggctgaggtttgttggcgcctaaaacaggagaa 31771305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 1721613 - 1721556
Alignment:
Q  305 agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagat 362  Q
    |||||||||||||| || |||| |||||||||||| ||||||||||||||||||||||    
T  1721613 agaattagggttggcagcgttaattggagtgttaattaggattaggaataagttagat 1721556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 305 - 372
Target Start/End: Complemental strand, 17726089 - 17726023
Alignment:
Q  305 agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagattagattagat 372  Q
    ||||||||||||   |||| || |||||||||||||||||||||||||||| ||||||||||||||||    
T  17726089 agaattagggttttaagtgataattggagtgttaactaggattaggaataa-ttagattagattagat 17726023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 318 - 363
Target Start/End: Original strand, 32440659 - 32440704
Alignment:
Q  318 ggagtgttatttggagtgttaactaggattaggaataagttagatt 363  Q
    |||||| || ||||||||||||||||||||||||||||||||||||    
T  32440659 ggagtgataattggagtgttaactaggattaggaataagttagatt 32440704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 22368196 - 22368254
Alignment:
Q  305 agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagatt 363  Q
    ||||||||||||   |||| || ||| ||||||||||||||||||||||||||||||||    
T  22368196 agaattagggttttaagtgataattgaagtgttaactaggattaggaataagttagatt 22368254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 467 - 516
Target Start/End: Original strand, 5878780 - 5878828
Alignment:
Q  467 tcatcacacaaagataaatattgaatcataccttatattattaattgtca 516  Q
    |||||||||||| |||||||||||||||||||||||||| | ||||||||    
T  5878780 tcatcacacaaa-ataaatattgaatcataccttatattttcaattgtca 5878828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 14184885 - 14184848
Alignment:
Q  23 atggagaggtgtgataataacatcagttttccgacgcg 60  Q
    |||||||||||||||||||||||||||||||| |||||    
T  14184885 atggagaggtgtgataataacatcagttttcctacgcg 14184848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 516
Target Start/End: Original strand, 5874891 - 5874939
Alignment:
Q  467 tcatcacacaaagataaatattgaatcataccttatattattaattgtca 516  Q
    |||||||||||  |||||||||||||||||||||||||| | ||||||||    
T  5874891 tcatcacacaac-ataaatattgaatcataccttatattgtcaattgtca 5874939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 100; Significance: 5e-49; HSPs: 5)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 51 - 179
Target Start/End: Original strand, 36664 - 36794
Alignment:
Q  51 ttccgacgcggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattt--tgtgtttttgaagaaaatgagga 148  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||  ||||||||||||||| |||||||    
T  36664 ttccaacgcggtgatcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaagaaaaagggattttgtgtgtttttgaagaagatgagga 36763  T
Q  149 atcgtagagagatggagagaaaggagggtta 179  Q
    |||||||||||||||||||||||||||||||    
T  36764 atcgtagagagatggagagaaaggagggtta 36794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 42852 - 42976
Alignment:
Q  60 ggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggc---agaagaagaagaaaggattt--tgtgtttttgaagaaaatgaggaatcgta 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| ||||||  ||||||||||||||| | |||||||||||    
T  42852 ggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaagaagaagaagggattttgtgtgtttttgaagaagacgaggaatcgta 42951  T
Q  155 gagagatggagagaaaggagggtta 179  Q
    |||||||||||||||||||||||||    
T  42952 gagagatggagagaaaggagggtta 42976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 266 - 362
Target Start/End: Original strand, 36966 - 37062
Alignment:
Q  266 tagatccaagggctgaggtttgtt-ggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagat 362  Q
    |||||||||||||| ||| ||||| ||| ||||||| || ||||||||| || | ||||||| |||||||||||| ||||||||||||||||||||||    
T  36966 tagatccaagggct-aggattgtttggcgcctaaaaaagaagaattaggatttgaagtgttaattggagtgttaattaggattaggaataagttagat 37062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 327 - 367
Target Start/End: Original strand, 43199 - 43239
Alignment:
Q  327 tttggagtgttaactaggattaggaataagttagattagat 367  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  43199 tttggagtgttaactacgattaggaataagttagattagat 43239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 36837 - 36876
Alignment:
Q  178 tattggaaaccaataacattaattatttgtcatttacaat 217  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  36837 tattggaaaccgataacattaattatttgtcatttacaat 36876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 7e-42; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 27444509 - 27444385
Alignment:
Q  60 ggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaaga---agaaaggattt--tgtgtttttgaagaaaatgaggaatcgta 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||||  ||||||||||||||| | |||||||||||    
T  27444509 ggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaagaagaagaagggattttgtgtgtttttgaagaagacgaggaatcgta 27444410  T
Q  155 gagagatggagagaaaggagggtta 179  Q
    |||||||||||||||||||||||||    
T  27444409 gagagatggagagaaaggagggtta 27444385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 328 - 373
Target Start/End: Complemental strand, 31444805 - 31444760
Alignment:
Q  328 ttggagtgttaactaggattaggaataagttagattagattagata 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31444805 ttggagtgttaactaggattaggaataagttagattagattagata 31444760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 327 - 367
Target Start/End: Complemental strand, 27444162 - 27444122
Alignment:
Q  327 tttggagtgttaactaggattaggaataagttagattagat 367  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  27444162 tttggagtgttaactacgattaggaataagttagattagat 27444122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 33054175 - 33054223
Alignment:
Q  320 agtgttatttggagtgttaactaggattaggaataagttagattagatt 368  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||||||||    
T  33054175 agtgttaattgtagtgttaattaggattaggaataagttagattagatt 33054223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 266 - 362
Target Start/End: Complemental strand, 10291 - 10195
Alignment:
Q  266 tagatccaagggctgaggtttgtt-ggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagat 362  Q
    |||||||||||||| ||| ||||| ||| ||||||| || |||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||    
T  10291 tagatccaagggct-aggattgtttggcgcctaaaaaagtagaattagggtttggagtgttaattggagtgttaactaggattgggaataagttagat 10195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 305 - 376
Target Start/End: Complemental strand, 997877 - 997806
Alignment:
Q  305 agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagattagattagatagat 376  Q
    |||||||||||||| || | || ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  997877 agaattagggttggcagggctaattgaagtgttaactaggattaggaataagttagattagattagatagat 997806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 288 - 363
Target Start/End: Complemental strand, 4453852 - 4453777
Alignment:
Q  288 ttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagatt 363  Q
    ||||| ||||||||   ||||||||||||   |||| || ||||||||||||||||||||||||||||||||||||    
T  4453852 ttggcgcctaaaatcatagaattagggttttaagtggtaattggagtgttaactaggattaggaataagttagatt 4453777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 318 - 363
Target Start/End: Complemental strand, 9208614 - 9208569
Alignment:
Q  318 ggagtgttatttggagtgttaactaggattaggaataagttagatt 363  Q
    |||||| || ||||||||||||||||||||||||||||||||||||    
T  9208614 ggagtgataattggagtgttaactaggattaggaataagttagatt 9208569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 328 - 367
Target Start/End: Complemental strand, 7161850 - 7161811
Alignment:
Q  328 ttggagtgttaactaggattaggaataagttagattagat 367  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  7161850 ttggagtgttaactaggattagaaataagttagattagat 7161811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 309 - 372
Target Start/End: Complemental strand, 3625234 - 3625169
Alignment:
Q  309 ttagggttgggagtgttatttggagtgttaactaggattaggaataagttaga--ttagattagat 372  Q
    |||||||||| |  |||| |||||||||||| |||||||||||||||||||||  |||||||||||    
T  3625234 ttagggttggcatggttaattggagtgttaattaggattaggaataagttagaagttagattagat 3625169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 6e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 305 - 372
Target Start/End: Original strand, 32651267 - 32651334
Alignment:
Q  305 agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagattagattagat 372  Q
    ||||||||||||   |||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  32651267 agaattagggttttaagtgataattggagtgttaactaggattaggaataagttagattagattagat 32651334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 288 - 372
Target Start/End: Original strand, 38467690 - 38467775
Alignment:
Q  288 ttggcacctaaaatagg-agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagattagattagat 372  Q
    ||||| ||||||||| | ||||||||||||   ||||||| |||||||||||||||||||||  ||||||||||||||||||||||    
T  38467690 ttggcgcctaaaataagtagaattagggttttaagtgttaattggagtgttaactaggattataaataagttagattagattagat 38467775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 41810377 - 41810334
Alignment:
Q  17 acaataatggagaggtgtgataataacatcagttttccgacgcg 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  41810377 acaataatggagaggtgtgataataacatcagttttccgacgcg 41810334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 288 - 360
Target Start/End: Complemental strand, 3649945 - 3649873
Alignment:
Q  288 ttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattaggaataagttag 360  Q
    ||||| ||||||| || ||| ||||||||   ||||||| |||||||||||||||||||||||||||||||||    
T  3649945 ttggcgcctaaaaaagtagatttagggttttaagtgttaattggagtgttaactaggattaggaataagttag 3649873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 307 - 370
Target Start/End: Complemental strand, 41810226 - 41810163
Alignment:
Q  307 aattagggttgggagtgttatttggagtgttaactaggattaggaataagttagattagattag 370  Q
    ||||||||||   |||| || |||||||||||||||||||||| ||||||||||||||||||||    
T  41810226 aattagggttttaagtggtaattggagtgttaactaggattagaaataagttagattagattag 41810163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 327 - 362
Target Start/End: Complemental strand, 26720272 - 26720237
Alignment:
Q  327 tttggagtgttaactaggattaggaataagttagat 362  Q
    ||||||||||||||||||||||||||||||||||||    
T  26720272 tttggagtgttaactaggattaggaataagttagat 26720237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 327 - 369
Target Start/End: Complemental strand, 32650 - 32608
Alignment:
Q  327 tttggagtgttaactaggattaggaataagttagattagatta 369  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  32650 tttggagtgttaactaggattagaaataagttagattagatta 32608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 288 - 362
Target Start/End: Original strand, 44663663 - 44663737
Alignment:
Q  288 ttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagat 362  Q
    ||||| ||||||||   ||||||||||||   |||| || |||||||||||||||||||||||||||||||||||    
T  44663663 ttggcgcctaaaatcatagaattagggttttaagtggtaattggagtgttaactaggattaggaataagttagat 44663737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 288 - 362
Target Start/End: Complemental strand, 35349066 - 35348991
Alignment:
Q  288 ttggcacctaaaatagg-agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagat 362  Q
    ||||| ||||||||| | ||||||||| ||   ||||||| |||||||||||||||||||||| ||||||||||||    
T  35349066 ttggcgcctaaaataagtagaattaggattttaagtgttaattggagtgttaactaggattagaaataagttagat 35348991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 16262692 - 16262741
Alignment:
Q  318 ggagtgttatttggagtgttaactaggattaggaataagttagattagat 367  Q
    |||||| || ||| ||||||||||||||||||||||||||||||||||||    
T  16262692 ggagtgataattgaagtgttaactaggattaggaataagttagattagat 16262741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 320 - 362
Target Start/End: Original strand, 21820186 - 21820228
Alignment:
Q  320 agtgttatttggagtgttaactaggattaggaataagttagat 362  Q
    ||||||| |||||||||||| ||||||||||||||||||||||    
T  21820186 agtgttaattggagtgttaattaggattaggaataagttagat 21820228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 483 - 516
Target Start/End: Original strand, 20431259 - 20431292
Alignment:
Q  483 aatattgaatcataccttatattattaattgtca 516  Q
    ||||||||||||||||||||||| ||||||||||    
T  20431259 aatattgaatcataccttatattgttaattgtca 20431292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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