View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3446_high_14 (Length: 250)

Name: NF3446_high_14
Description: NF3446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3446_high_14
NF3446_high_14
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-233)||(107175-107407)
[»] chr4 (3 HSPs)
chr4 (129-235)||(11029778-11029884)
chr4 (129-194)||(17512186-17512251)
chr4 (129-192)||(33370857-33370920)
[»] chr1 (2 HSPs)
chr1 (131-181)||(30780977-30781027)
chr1 (129-166)||(34716427-34716464)
[»] chr8 (3 HSPs)
chr8 (129-192)||(37562298-37562361)
chr8 (133-174)||(37563032-37563073)
chr8 (129-166)||(42346113-42346150)
[»] chr5 (4 HSPs)
chr5 (129-183)||(26711571-26711625)
chr5 (129-183)||(26981308-26981362)
chr5 (129-194)||(4555440-4555505)
chr5 (133-198)||(32943524-32943589)
[»] chr7 (1 HSPs)
chr7 (129-162)||(40320422-40320455)
[»] chr6 (1 HSPs)
chr6 (129-166)||(28975343-28975380)
[»] chr3 (1 HSPs)
chr3 (129-166)||(45297552-45297589)


Alignment Details
Target: scaffold0003 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 107407 - 107175
Alignment:
Q  1 tatcttgcttgtttcagaaatgtgatttttgagagtgattgcgagagtttgattatgcagattcgtaatgacattgaggaacctagaacctatgttggga 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  107407 tatcttgcttgtttcagaaatgtgatttttgagagggattgcgagagtttgattatgcagattcgtagtgacattgaggaacctagaacctatgttggga 107308  T
Q  101 atatagtgaaagggataagatatcagtgggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagattaggtaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  107307 atatagtgaaagggataagatatcagtgggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagttattagattaagtaag 107208  T
Q  201 gaacatattcttattatacactctcatcactag 233  Q
    |||||||||||||||||||||||||||||||||    
T  107207 gaacatattcttattatacactctcatcactag 107175  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 235
Target Start/End: Complemental strand, 11029884 - 11029778
Alignment:
Q  129 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagattaggtaaggaacatattcttattatacactctcatc 228  Q
    |||||||||||||  |||  ||||||||||  ||||| | |||||||||| |||| |||||||| | |||| ||||| | |||||||||||||||||| |    
T  11029884 ggggtttagcatgaaaaatgagagttgtttttcatcacaggaaagtaaatattagacattagatcaagtaaagaacacaatcttattatacactctcaac 11029785  T
Q  229 actagat 235  Q
    || ||||    
T  11029784 acgagat 11029778  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 17512251 - 17512186
Alignment:
Q  129 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagatta 194  Q
    ||||||||||||| ||| | | ||||||||||||||||  |||||||||| |||||||||||||||    
T  17512251 ggggtttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttagtcattagatta 17512186  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 33370920 - 33370857
Alignment:
Q  129 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagat 192  Q
    ||||||||||||||||||| | | |||||||||| |||  |||||| |||||||| ||||||||    
T  33370920 ggggtttagcatgggaaaggatacttgtttcccaccatgggaaagttaatgttagccattagat 33370857  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 30781027 - 30780977
Alignment:
Q  131 ggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgtt 181  Q
    |||||| |||||||||| ||||||||||||||||||  |||||||||||||    
T  30781027 ggtttaacatgggaaaggagagttgtttcccatcatgggaaagtaaatgtt 30780977  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 34716427 - 34716464
Alignment:
Q  129 ggggtttagcatgggaaagcagagttgtttcccatcat 166  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  34716427 ggggtttagcatgggaatggagagttgtttcccatcat 34716464  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 37562298 - 37562361
Alignment:
Q  129 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagat 192  Q
    ||||||||||||||||||| ||| |||||||||| |||| |||||| ||| |||  ||||||||    
T  37562298 ggggtttagcatgggaaaggagaattgtttcccaccataggaaagtcaattttaaccattagat 37562361  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 37563073 - 37563032
Alignment:
Q  133 tttagcatgggaaagcagagttgtttcccatcatacgaaagt 174  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||    
T  37563073 tttagcatgggaaagaagagttgtttctcatcataggaaagt 37563032  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 42346150 - 42346113
Alignment:
Q  129 ggggtttagcatgggaaagcagagttgtttcccatcat 166  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  42346150 ggggtttagcatgggaatggagagttgtttcccatcat 42346113  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 26711571 - 26711625
Alignment:
Q  129 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttag 183  Q
    ||||||||| ||||||||| | |||||||||||| |||| |||||||||| ||||    
T  26711571 ggggtttagtatgggaaaggaaagttgtttcccaacataggaaagtaaattttag 26711625  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 26981308 - 26981362
Alignment:
Q  129 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttag 183  Q
    ||||||||| ||||||||| | |||||||||||| |||| |||||||||| ||||    
T  26981308 ggggtttagtatgggaaaggaaagttgtttcccaacataggaaagtaaattttag 26981362  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 4555505 - 4555440
Alignment:
Q  129 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagatta 194  Q
    ||||||||||||||||||    |||| |||||||||||  |||||| |||||||| ||||||||||    
T  4555505 ggggtttagcatgggaaatggaagttctttcccatcatgtgaaagttaatgttagccattagatta 4555440  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 32943524 - 32943589
Alignment:
Q  133 tttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagattaggta 198  Q
    ||||||||||||||| | | |||||||||| |||  |||||| |||||||| |||||||| |||||    
T  32943524 tttagcatgggaaaggatatttgtttcccaccatgggaaagttaatgttagccattagatcaggta 32943589  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 40320455 - 40320422
Alignment:
Q  129 ggggtttagcatgggaaagcagagttgtttccca 162  Q
    ||||||||||||||||||| ||||||||||||||    
T  40320455 ggggtttagcatgggaaaggagagttgtttccca 40320422  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 28975343 - 28975380
Alignment:
Q  129 ggggtttagcatgggaaagcagagttgtttcccatcat 166  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  28975343 ggggtttagcatgggaaaggagagttgtttcctatcat 28975380  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 45297552 - 45297589
Alignment:
Q  129 ggggtttagcatgggaaagcagagttgtttcccatcat 166  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  45297552 ggggtttagtatgggaaaggagagttgtttcccatcat 45297589  T

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