View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3446_high_4 (Length: 537)
Name: NF3446_high_4
Description: NF3446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3446_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 182 - 533
Target Start/End: Original strand, 43238356 - 43238707
Alignment:
| Q |
182 |
tgagaggataaagttgtcacaaaattgattgtacaagtataatttttcttatcaaaattactccattcctatacgtccgctnnnnnnnnnnnnttctcag |
281 |
Q |
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| T |
43238356 |
tgagaggataaagttgtcacaaaattgatcgtacaaatataatttttcctatcaaaattactccattcctatacgtccgctaaaaacaaaaaattctcag |
43238455 |
T |
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| Q |
282 |
cccttttaggcaattattgtaatcgacagttggtcatggattgagaatcttgtaaagacataataatttaattatatattagataaattacgtctatatc |
381 |
Q |
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| T |
43238456 |
cccttttaggcaattattgtaatcgacagttggtcatggattgagaatcttgtaaagacataataatttaattatatattagataaattacgtctatatc |
43238555 |
T |
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| Q |
382 |
atctcttaattttatttataaagacatattttcactcaccttttttgcaccactaactttatcagacccccttcgaaagnnnnnnnnnccttattagacc |
481 |
Q |
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| T |
43238556 |
atctcttaattttatttataaagacatattttcactcaccttttttgcaccactaactttatcagacccccttcgaaagaaaaaaaaaccttattagacc |
43238655 |
T |
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| Q |
482 |
aagaaataaaatactgaaaatactttcatctcatcttttctttgtttcttta |
533 |
Q |
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| T |
43238656 |
aagaaataaaatactgaaaatactttcatctcatcttttctttgtttcttta |
43238707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 43238174 - 43238285
Alignment:
| Q |
1 |
ttttttcttttacttatgatattcgattcgatggatgcctaataagttttaaaccgacattatatcaaaggagaagtgttatttaaacaattatggaaca |
100 |
Q |
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| T |
43238174 |
ttttttcttttacttatgatattcgattcgatggatgtctaataagttttaaaccgacatcatatcaaaggataagtgttatttaaataattatgggaca |
43238273 |
T |
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| Q |
101 |
actataaattta |
112 |
Q |
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| T |
43238274 |
actataaattta |
43238285 |
T |
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