View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3446_high_7 (Length: 358)

Name: NF3446_high_7
Description: NF3446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3446_high_7
NF3446_high_7
[»] chr2 (24 HSPs)
chr2 (18-346)||(39099627-39099955)
chr2 (19-320)||(39604357-39604658)
chr2 (25-267)||(2362726-2362968)
chr2 (131-270)||(39503931-39504071)
chr2 (19-337)||(39126527-39126841)
chr2 (18-260)||(39216697-39216939)
chr2 (18-200)||(39380454-39380636)
chr2 (95-251)||(39371234-39371390)
chr2 (20-214)||(39144638-39144832)
chr2 (72-202)||(39472722-39472852)
chr2 (77-258)||(39196412-39196593)
chr2 (20-193)||(39493406-39493579)
chr2 (77-202)||(44895065-44895190)
chr2 (18-249)||(39396563-39396794)
chr2 (20-214)||(39425479-39425673)
chr2 (77-258)||(39223810-39223991)
chr2 (18-258)||(39153099-39153339)
chr2 (95-175)||(39188739-39188819)
chr2 (72-163)||(39205739-39205830)
chr2 (95-252)||(39421094-39421251)
chr2 (77-202)||(39138742-39138867)
chr2 (91-250)||(39412941-39413098)
chr2 (72-229)||(39387425-39387582)
chr2 (95-128)||(31606539-31606572)
[»] chr3 (1 HSPs)
chr3 (69-252)||(51576076-51576259)
[»] chr4 (1 HSPs)
chr4 (78-211)||(33152212-33152345)
[»] chr5 (1 HSPs)
chr5 (91-258)||(33562402-33562569)
[»] chr7 (1 HSPs)
chr7 (77-195)||(19808999-19809117)
[»] chr8 (1 HSPs)
chr8 (96-202)||(45343083-45343189)


Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 39099627 - 39099955
Alignment:
Q  18 tgtgtaagagaagaagcgatgaagctggcacttaagttgaaatcttttataagtgaaactactgaaaattcggtggcggttcttggttttctactccttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39099627 tgtgtaagagaagaagcgatgaagctggcacttaagttgaaatcttttataagtgaaactactgaaaattcggtggcggttcttggttttctactccttc 39099726  T
Q  118 tgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttgggtttgctgctcagcacaagatagctgtaaagctctttggaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39099727 tgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttgggtttgctgctcagcacaagatagctgtaaagctctttggaat 39099826  T
Q  218 tctgggttttgccgataaagcttctggtatgttagtttagaaaagttttgttttagacaccagctattatactaattttcttctcactttaaatttcaag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39099827 tctgggttttgccgataaagcttctggtatgttagtttagaaaagttttgttttagacaacagctattatactaattttcttctcactttaaatttcaag 39099926  T
Q  318 tgcttgttacatcatttgtttatatccta 346  Q
    |||||||||||||||||||| ||||||||    
T  39099927 tgcttgttacatcatttgttaatatccta 39099955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 39604357 - 39604658
Alignment:
Q  19 gtgtaagagaagaagcgatgaagctggcacttaagttgaaatcttttataagtgaaactactgaaaattcggtggcggttcttggttttctactccttct 118  Q
    |||||||||||||||| |||||||| |||||||| |||||||||   |||||||||| ||| ||||||| |||||| ||||| ||||||||||||||| |    
T  39604357 gtgtaagagaagaagcaatgaagctagcacttaatttgaaatctaacataagtgaaaataccgaaaatttggtggcagttctgggttttctactccttgt 39604456  T
Q  119 gtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttgggtttgctgctcagcacaagatagctgtaaagctctttggaatt 218  Q
    ||||||||||  ||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |||||||||||||| |||| ||||||| |    
T  39604457 gtcaatttatggattggctccttctttcgatgaagatgaagttttaaagcttttcgagtttgctgctcaggacaagatagctgtagagctgtttggaact 39604556  T
Q  219 ctgggttttgccgataaagcttctggtatgttagtttagaaaagttttgttttagacaccagctattatactaattttcttctcactttaaatttcaagt 318  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| ||||| |||||||||||||||||||||    
T  39604557 ctgggttttgccgataaagcttctggtatgttagtttagaaatgttttgtttcagataccagctattatacttatttttttctcactttaaatttcaagt 39604656  T
Q  319 gc 320  Q
    ||    
T  39604657 gc 39604658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 25 - 267
Target Start/End: Original strand, 2362726 - 2362968
Alignment:
Q  25 gagaagaagcgatgaagctggcacttaagttgaaatcttttataagtgaaactactgaaaattcggtggcggttcttggttttctactccttctgtcaat 124  Q
    |||||||||| |||||||| ||||||||  ||||| |||  ||  | |||| |||||||||| | ||| | ||||| || ||| | ||||||||||||||    
T  2362726 gagaagaagcaatgaagctagcacttaaactgaaagcttacattggcgaaaatactgaaaatccagtgccagttctggggtttttgctccttctgtcaat 2362825  T
Q  125 ttataaattggctccttcttttgatgaagatgaagttttaaagctttttgggtttgctgctcagcacaagatagctgtaaagctctttggaattctgggt 224  Q
    ||||  ||||| | ||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||| |||| ||||| | | |||||    
T  2362826 ttatggattggtttcttctttcgatgaagatgaaattttaaagctttttgggtttgctgctcaacacaagatatctgtagagctgtttgggactatgggt 2362925  T
Q  225 tttgccgataaagcttctggtatgttagtttagaaaagttttg 267  Q
    || ||  |||||| |||||||||||||||||||||| ||||||    
T  2362926 ttggcacataaagtttctggtatgttagtttagaaatgttttg 2362968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 131 - 270
Target Start/End: Complemental strand, 39504071 - 39503931
Alignment:
Q  131 attggctccttcttttgatgaagatgaagttttaaagctttttgggtttgctgctcagcacaagatagctgtaaagctctttggaattctgggttttgcc 230  Q
    ||||||| ||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||| ||||||| ||| ||||||||     
T  39504071 attggctacttctttcgatgaagatgaagttttcaagctttttggttttgctgctcagcacgagatagctgtagagctgtttggaactcttggttttgca 39503972  T
Q  231 gataaagcttctggtatgttagttt-agaaaagttttgttt 270  Q
    ||||||||||| |||||||| |||| ||||| |||||||||    
T  39503971 gataaagcttccggtatgttcgtttgagaaatgttttgttt 39503931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 337
Target Start/End: Original strand, 39126527 - 39126841
Alignment:
Q  19 gtgtaagagaagaagcgatgaagctggcacttaagttgaaatcttttataagtgaaactactgaaaattcggtggcggttcttggttttctactccttct 118  Q
    |||||||||||||||| |||||||| || ||||| |||||||||   ||||||||||  ||   |||||| | |||| |||| ||||||||||||||  |    
T  39126527 gtgtaagagaagaagcaatgaagctagctcttaaattgaaatctaacataagtgaaaaaacctgaaattcagcggcgattctgggttttctactcctg-t 39126625  T
Q  119 gtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttggg-tttgctgctcagcacaagatagctgtaaagctctttggaat 217  Q
    |||| ||||||  |||||| |||||||||| || |  || ||||| ||| ||||| || |||||| ||||||||||||||||| || |  | | | |||     
T  39126626 gtcagtttatat-ttggcttcttcttttgacgatgtcgacgttttgaaggttttttggatttgcttctcagcacaagatagctttagaattgtgtagaac 39126724  T
Q  218 tctgggttttgccgataaagcttctggtatgttagtttagaaaagttttgttttagacaccagctattatactaattttcttctcactttaaatttcaag 317  Q
    ||| |||||||| ||   || |||||||||| || || ||||| ||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||    
T  39126725 tcttggttttgcaga---agtttctggtatgctacttcagaaatgttttgtatcagacaccagctattatacttattttcttctcactttaaatttcaag 39126821  T
Q  318 tgcttgttacatcatttgtt 337  Q
    ||   |||||||||| ||||    
T  39126822 tgtaggttacatcatgtgtt 39126841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 39216697 - 39216939
Alignment:
Q  18 tgtgtaagagaagaagcgatgaagctggcacttaagttgaaatcttttataagtgaaactactgaaaattcggtggcggttcttggttttctactccttc 117  Q
    |||||||||||||||||  ||||||| ||| || | |||||||||   || ||||||| |||| |||||||  ||| |||||| |||||||| || |||     
T  39216697 tgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggtggttctcggttttcttctgcttt 39216796  T
Q  118 tgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttgggtttgctgctcagcacaagatagctgtaaagctctttggaat 217  Q
    |||||||||||  ||||| | ||||||||| |||||||||||||||  |||||||||  | || ||||||||||||||||||| |  | || ||||  |     
T  39216797 tgtcaatttatggattggttacttcttttggtgaagatgaagttttggagctttttgcatctgttgctcagcacaagatagctattgaactgtttgagac 39216896  T
Q  218 tctgggttttgccgataaagcttctggtatgttagtttagaaa 260  Q
     |||||||||||  |||||| ||||||||||||| ||||||||    
T  39216897 cctgggttttgcaaataaagtttctggtatgttaatttagaaa 39216939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 39380636 - 39380454
Alignment:
Q  18 tgtgtaagagaagaagcgatgaagctggcacttaagttgaaatcttttataagtgaaactactgaaaattcggtggcggttcttggttttctactccttc 117  Q
    |||||||||||||||||  ||| ||| |||||| | |||||| |||  ||||| || | ||||||| |||| |||||||||||||| |||||||| |||     
T  39380636 tgtgtaagagaagaagcactgacgctagcacttgatttgaaagcttacataagagagaatactgaagattctgtggcggttcttggatttctactgcttt 39380537  T
Q  118 tgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttgggtttgctgctcagcacaagatagct 200  Q
    |||||||||||  ||||  | ||||||| |||||||||||| ||||  |||||||||  || | |||||||||||||||||||    
T  39380536 tgtcaatttatggattgcttacttctttcgatgaagatgaaattttggagctttttgcattggttgctcagcacaagatagct 39380454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 95 - 251
Target Start/End: Original strand, 39371234 - 39371390
Alignment:
Q  95 ggttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttgggtttgctgctcagcacaag 194  Q
    |||||||||||||||| | ||| |||||| ||||  ||||| | |||||||||||||||||||| ||||  |||||||||  |||| |||| ||||||||    
T  39371234 ggttcttggttttctattgcttttgtcaaattatggattggttacttcttttgatgaagatgaacttttggagctttttgcatttgttgctgagcacaag 39371333  T
Q  195 atagctgtaaagctctttggaattctgggttttgccgataaagcttctggtatgtta 251  Q
    |||||| |  |||| |||||||   ||||||||||| | ||||||||||||||||||    
T  39371334 atagctatggagctgtttggaaccatgggttttgccaacaaagcttctggtatgtta 39371390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 39144638 - 39144832
Alignment:
Q  20 tgtaagagaagaagcgatgaagctggcacttaagttgaaatcttttataagtgaaactactgaaaattcggtggcggttcttggttttctactccttctg 119  Q
    ||||| ||||||||| |||||||| |||||| | |||||| |   ||||||| |||  || |||||||| | |||| |||| ||||||||||||||||||    
T  39144638 tgtaaaagaagaagcaatgaagctagcacttgatttgaaagccaatataagtcaaaacacagaaaattcagcggcgattctaggttttctactccttctg 39144737  T
Q  120 tcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttgggtttgctgctcagcacaagatagctgtaaagctctttgg 214  Q
    |||||||||    ||| ||| |||||  |||||||||| |||||||||||||||||  ||| | |||||||| | ||||||||| |||| |||||    
T  39144738 tcaatttatgggctgggtccatctttcaatgaagatgatgttttaaagctttttggacttgtttctcagcacgacatagctgtagagctgtttgg 39144832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 39472852 - 39472722
Alignment:
Q  72 gaaactactgaaaattcggtggcggttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagcttt 171  Q
    |||| ||||||||||||  |||  ||||||||||||||||| ||| ||||||||||| |||||  | |||||||||||||||||||||| ||  |||| |    
T  39472852 gaaaatactgaaaattctttggtagttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctct 39472753  T
Q  172 ttgggtttgctgctcagcacaagatagctgt 202  Q
    | |  |||| |||||||||||||||||||||    
T  39472752 tcgcatttgttgctcagcacaagatagctgt 39472722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 77 - 258
Target Start/End: Complemental strand, 39196593 - 39196412
Alignment:
Q  77 tactgaaaattcggtggcggttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttggg 176  Q
    ||||||||||||  ||||||||||||| ||||| || ||| |||||||||||||||||  |  ||||||||||||||||||||||||  |||||||||      
T  39196593 tactgaaaattctttggcggttcttggctttctgctgcttttgtcaatttataaattgcttgattcttttgatgaagatgaagttttggagctttttgca 39196494  T
Q  177 tttgctgctcagcacaagatagctgtaaagctctttggaattctgggttttgccgataaagcttctggtatgttagtttaga 258  Q
    |||| ||||| | |||| || || ||  |||| |||||||  |||||||||||  | | || |||||||||| || ||||||    
T  39196493 tttgttgctctgaacaatattgcggtggagctgtttggaagcctgggttttgcaaacagagtttctggtatgataatttaga 39196412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 39493579 - 39493406
Alignment:
Q  20 tgtaagagaagaagcgatgaagctggcacttaagttgaaatcttttataagtgaaactactgaaaattcggtggcggttcttggttttctactccttctg 119  Q
    ||||| ||||||||| |||||||| |||||| |  ||||| ||   |||||| |||  || |||||||| || |||||||| ||||||||||||||||||    
T  39493579 tgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctg 39493480  T
Q  120 tcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttgggtttgctgctcagcacaa 193  Q
    |||||||||  | ||| ||| ||||| ||||| ||||| ||||||||||| |||||  ||| | ||||||||||    
T  39493479 tcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaa 39493406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 77 - 202
Target Start/End: Complemental strand, 44895190 - 44895065
Alignment:
Q  77 tactgaaaattcggtggcggttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttggg 176  Q
    ||||||||||||  ||| |||||||||||||||||| ||| |||||||||||  ||||  | ||||||| |||||||  ||||||||  |||||||||      
T  44895190 tactgaaaattctttggtggttcttggttttctactgcttttgtcaatttatggattgattacttctttcgatgaaggcgaagttttggagctttttgca 44895091  T
Q  177 tttgctgctcagcacaagatagctgt 202  Q
    |||| |||||||||||||||||||||    
T  44895090 tttgttgctcagcacaagatagctgt 44895065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 39396794 - 39396563
Alignment:
Q  18 tgtgtaagagaagaagcgatgaagctggcacttaagttgaaatcttttataagtgaaactactgaaaattcggtggcggttcttggttttctactccttc 117  Q
    |||||||||||||||||  ||||||| |||| | | |||| | |||  || || |||| ||||||||||||  ||||||||||||||||| |  | |||     
T  39396794 tgtgtaagagaagaagcactgaagctagcacatgatttgagagcttacattagagaaaatactgaaaattctttggcggttcttggttttttgttgcttt 39396695  T
Q  118 tgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttgggtttgctgctcagcacaagatagctgtaaagctctttggaat 217  Q
    |||||||||||  ||||  | ||||||| |||||||||||||||||  |||||||||  |  | |||||||||||||| |||| |  |||| ||||  |     
T  39396694 tgtcaatttatggattgcttacttctttcgatgaagatgaagttttggagctttttgcatcggttgctcagcacaagacagctatggagctgtttgagac 39396595  T
Q  218 tctgggttttgccgataaagcttctggtatgt 249  Q
     |||||||||||  |||||| |||||||||||    
T  39396594 cctgggttttgcaaataaagtttctggtatgt 39396563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 39425673 - 39425479
Alignment:
Q  20 tgtaagagaagaagcgatgaagctggcacttaagttgaaatcttttataagtgaaactactgaaaattcggtggcggttcttggttttctactccttctg 119  Q
    ||||| ||||||||| |||||| | |||||| | |||||| ||   |||||| |||  | ||||||||| | ||| ||||||||||||||||| ||||||    
T  39425673 tgtaaaagaagaagcaatgaagttagcacttgatttgaaagctaacataagtcaaaacaatgaaaattcagcggctgttcttggttttctacttcttctg 39425574  T
Q  120 tcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttgggtttgctgctcagcacaagatagctgtaaagctctttgg 214  Q
    |||||||||  | ||| ||||||||| || ||||| |||||||| |||||||| |   ||| | ||||||||||  |||||||| |||| |||||    
T  39425573 tcaatttatggactggttccttctttcgacgaagaagaagttttgaagcttttcgaacttgtttctcagcacaacttagctgtagagctgtttgg 39425479  T

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Target: chr2; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 258
Target Start/End: Original strand, 39223810 - 39223991
Alignment:
Q  77 tactgaaaattcggtggcggttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttggg 176  Q
    ||||||||| ||  ||||||||||||||||||| || ||| |||||||||||||||||  |  ||| |||||||||||||||||| |  | |||||||      
T  39223810 tactgaaaaatctttggcggttcttggttttctgctgcttttgtcaatttataaattgcttgattcatttgatgaagatgaagttctggatctttttgca 39223909  T
Q  177 tttgctgctcagcacaagatagctgtaaagctctttggaattctgggttttgccgataaagcttctggtatgttagtttaga 258  Q
    |||| ||||| |||||| || |||||  |||| ||||||   |||||||||||  | | || ||||||||||||| ||||||    
T  39223910 tttgttgctctgcacaaaattgctgtggagctgtttggatgcctgggttttgcaaacagagtttctggtatgttaatttaga 39223991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 39153099 - 39153339
Alignment:
Q  18 tgtgtaagagaagaagcgatgaagctggcacttaagttgaaatcttttataagtgaaactactgaaaattcggtggcggttcttggttttctactccttc 117  Q
    |||||||||||||||||  |||| || |||| | | |||||| ||   ||||  |||| ||||||||||||  ||| ||||||||||||||||||  ||     
T  39153099 tgtgtaagagaagaagcattgaaactcgcacatgatttgaaagctaaaataaaagaaaatactgaaaattctttggtggttcttggttttctactggttt 39153198  T
Q  118 tgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttgggtttgctgctcagcacaagatagctgtaaagctctttggaat 217  Q
    |||| ||||||  ||||| | ||||||| ||| |||||||||| ||  |||||||||  |||| |||||| |||||||  |||||  | || ||| | |     
T  39153199 tgtcgatttatggattggttacttctttcgataaagatgaagtcttggagctttttgcatttgttgctcaacacaagactgctgtggaactatttcggac 39153298  T
Q  218 tctgggttttgccgataaagcttctggtatgttagtttaga 258  Q
     |||||||||||  |||||| ||||||||||||| ||||||    
T  39153299 cctgggttttgcaaataaagtttctggtatgttaatttaga 39153339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 95 - 175
Target Start/End: Complemental strand, 39188819 - 39188739
Alignment:
Q  95 ggttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttgg 175  Q
    |||||||||||||||||||||||| |||||||||   |||| |||||||||  |||||||||| |||||||||||||||||    
T  39188819 ggttcttggttttctactccttctatcaatttatggtttggttccttctttcaatgaagatgatgttttaaagctttttgg 39188739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 39205830 - 39205739
Alignment:
Q  72 gaaactactgaaaattcggtggcggttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagatgaagtttt 163  Q
    |||| ||||||||||||  |||||||||||||||||||||| ||| |||| ||||||||||||  |  |||||||||| |||||||||||||    
T  39205830 gaaaatactgaaaattctatggcggttcttggttttctactgcttttgtcgatttataaattgcttgattcttttgataaagatgaagtttt 39205739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 95 - 252
Target Start/End: Complemental strand, 39421251 - 39421094
Alignment:
Q  95 ggttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttgggtttgctgctcagcacaag 194  Q
    |||||| ||||||||||| ||| ||||||||||  |||||| | ||| |||  ||||||||||||| ||  |||||||||  |||| |||||||||||||    
T  39421251 ggttctcggttttctactgcttttgtcaatttaccaattggttacttatttcaatgaagatgaagtgttggagctttttgcatttgttgctcagcacaag 39421152  T
Q  195 atagctgtaaagctctttggaattctgggttttgccgataaagcttctggtatgttag 252  Q
    ||||| ||  || | ||||  |  |||||||||||  |||||| |||||||| |||||    
T  39421151 atagcagttgagttgtttgagaccctgggttttgcaaataaagtttctggtaagttag 39421094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 202
Target Start/End: Original strand, 39138742 - 39138867
Alignment:
Q  77 tactgaaaattcggtggcggttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttggg 176  Q
    ||||||||||||  ||| |||||| |||||||||||  || ||||| ||||| |||||  | ||| |||||||||||||||||| ||  |||||||        
T  39138742 tactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttacttattttgatgaagatgaagtcttggagcttttcaca 39138841  T
Q  177 tttgctgctcagcacaagatagctgt 202  Q
    |||| |||||||||||||| ||||||    
T  39138842 tttgttgctcagcacaagacagctgt 39138867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 91 - 250
Target Start/End: Complemental strand, 39413098 - 39412941
Alignment:
Q  91 tggcggttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttgggtttgctgctcagca 190  Q
    ||||||||||| |||||||  | ||| ||||| ||| |  ||||| | ||| ||| |||||||||||| | ||  |||||||||  |||| |||||| ||    
T  39413098 tggcggttcttagttttctgttgcttttgtcagtttgtggattggttacttttttggatgaagatgaaatcttggagctttttgcatttgttgctcaaca 39412999  T
Q  191 caagatagctgtaaagctctttggaattctgggttttgccgataaagcttctggtatgtt 250  Q
    |||||||||||  ||||| |||||||  |||||||||||  | |||| ||||||||||||    
T  39412998 caagatagctgcgaagctgtttggaaccctgggttttgc--aaaaagtttctggtatgtt 39412941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 229
Target Start/End: Complemental strand, 39387582 - 39387425
Alignment:
Q  72 gaaactactgaaaattcggtggcggttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagcttt 171  Q
    |||| ||||||||||||  |||| |||||||||||||| || ||| |||||||||||    ||  |  || |||||| ||||||||||||||  ||||||    
T  39387582 gaaaatactgaaaattctttggccgttcttggttttctgctgcttttgtcaatttatgggctgcttgattattttgacgaagatgaagttttggagcttt 39387483  T
Q  172 ttgggtttgctgctcagcacaagatagctgtaaagctctttggaattctgggttttgc 229  Q
    |||  |||| ||||  |||| | || |||||  |||| ||||||| ||||||||||||    
T  39387482 ttgcatttgttgctatgcacgaaattgctgtggagctatttggaagtctgggttttgc 39387425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 31606572 - 31606539
Alignment:
Q  95 ggttcttggttttctactccttctgtcaatttat 128  Q
    ||||||||||||||||||||||| ||||||||||    
T  31606572 ggttcttggttttctactccttccgtcaatttat 31606539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 69 - 252
Target Start/End: Original strand, 51576076 - 51576259
Alignment:
Q  69 agtgaaactactgaaaattcggtggcggttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagc 168  Q
    ||||||| |||||||||||| |||| ||||||||||| ||| ||||||||||||||||||  ||||| ||||| ||||||| |||||||| |||| |||     
T  51576076 agtgaaaatactgaaaattccgtggtggttcttggttatctgctccttctgtcaatttatggattggttccttattttgataaagatgaaattttgaagt 51576175  T
Q  169 tttttgggtttgctgctcagcacaagatagctgtaaagctctttggaattctgggttttgccgataaagcttctggtatgttag 252  Q
     |||||| |||| |||||||||||| ||||| ||| |||| ||||||||  |||||||  |  |||||  ||||||||||||||    
T  51576176 attttggatttgttgctcagcacaaaatagcagtagagctgtttggaatgatgggtttgacacataaaatttctggtatgttag 51576259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 33152212 - 33152345
Alignment:
Q  78 actgaaaattcggtggcggttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttgggt 177  Q
    ||||||||||| ||   |||||| |||||||| || |||||||||||||||   |||| | | |||||||||||||||||||||||||||||||||||      
T  33152212 actgaaaattctgtccaggttctgggttttctgctacttctgtcaatttatgggttggtttcatcttttgatgaagatgaagttttaaagctttttggaa 33152311  T
Q  178 ttgctgctcagcacaagatagctgtaaagctctt 211  Q
    | | |||||| ||||||||||| ||| |||||||    
T  33152312 tcgttgctcaacacaagatagcggtagagctctt 33152345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 91 - 258
Target Start/End: Original strand, 33562402 - 33562569
Alignment:
Q  91 tggcggttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttgggtttgctgctcagca 190  Q
    |||||||||||||||||||  | ||| |||||||||||||||||  |  ||||||||||||||||||||||||  |||||||||  |||| ||||| |||    
T  33562402 tggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattcttttgatgaagatgaagttttggagctttttgcatttgttgctctgca 33562501  T
Q  191 caagatagctgtaaagctctttggaattctgggttttgccgataaagcttctggtatgttagtttaga 258  Q
    ||| || || ||  |||| |||| ||  |||||||||||  | | || ||||||||||||| ||||||    
T  33562502 caaaattgccgtggagctgtttgaaagcctgggttttgcaaacagagtttctggtatgttaatttaga 33562569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 77 - 195
Target Start/End: Original strand, 19808999 - 19809117
Alignment:
Q  77 tactgaaaattcggtggcggttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttggg 176  Q
    ||||||||||||  ||| |||||||||||||||||| ||| ||||| ||||| |||||  | ||| |||||||||||||||||| ||  ||||||| |      
T  19808999 tactgaaaattctctggtggttcttggttttctactgcttttgtcagtttatgaattgcttacttattttgatgaagatgaagtcttggagcttttcgca 19809098  T
Q  177 tttgctgctcagcacaaga 195  Q
    |||| ||||||||||||||    
T  19809099 tttgttgctcagcacaaga 19809117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 45343083 - 45343189
Alignment:
Q  96 gttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttgggtttgctgctcagcacaaga 195  Q
    |||||||||||||||||  || |||||||| ||  ||||  | ||||||||||| |||||||||| ||  |||||||||  | || || |||||||||||    
T  45343083 gttcttggttttctactgattttgtcaattcatgtattgcttacttcttttgataaagatgaagtcttggagctttttgtatctgttgttcagcacaaga 45343182  T
Q  196 tagctgt 202  Q
    || ||||    
T  45343183 tatctgt 45343189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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