View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3446_low_10 (Length: 311)
Name: NF3446_low_10
Description: NF3446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3446_low_10 |
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| [»] scaffold0157 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 12465172 - 12464894
Alignment:
| Q |
13 |
aatatttcattt-atttttctaattaaaattattttctagaagaaaattcctaacacgtannnnnnnnnnncatcttatagaaaaagcatgattgggaaa |
111 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||| |
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| T |
12465172 |
aatatttcattttatttttataattaaaattattttctagaagaaaattcctaacacat---tttttttttcatcttatagaaaaagtatgattgggaaa |
12465076 |
T |
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| Q |
112 |
acgatgattcaggagctgcttcaagaggagattggtggaaaggtatcatttgacaatgtttgataaatatatttgttctctaaaattttgcatatggctg |
211 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12465075 |
acgatgattcaggagttgcttcaagaggagattggtggaaaggtatcctttgacaatgtttgataaatatatttgttctctaaaattttgcatatggctg |
12464976 |
T |
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| Q |
212 |
gaactagagtgacctaacattctcattgttttgttgtcttgttaattttccatcaccaacagggggtctttattattaaaat |
293 |
Q |
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| T |
12464975 |
gaactagagtggcctaacattctcattgttttgttgtcttgttaattttccatcaccaacagggggtctttattattaaaat |
12464894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 84 - 290
Target Start/End: Complemental strand, 12483800 - 12483585
Alignment:
| Q |
84 |
atcttatagaaaaagcatgattgggaaaacgatgattcaggagctgcttcaagaggagattggtggaaaggtatcatttgacaatgtttgataaatatat |
183 |
Q |
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|||||||||| |||| |||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||| | ||| |||| |||||| |||||| |
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| T |
12483800 |
atcttatagacaaagtatgattgggaaaacaatgattcagaagttgcttcaagaggagattggtggaaaggtatcttatgataatgcttgatatatatat |
12483701 |
T |
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| Q |
184 |
---------ttgttctctaaaattttgcatatggctggaactagagtgacctaacattctcattgttttgttgtcttgttaattttccatcaccaacagg |
274 |
Q |
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| T |
12483700 |
atatatatattgttctctaaacttttgcatatgaatggaactagagtggcctaacattctcattattttattgtcttgttaattttccatcaccaacaag |
12483601 |
T |
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| Q |
275 |
gggtctttattattaa |
290 |
Q |
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| T |
12483600 |
gggtctttattattaa |
12483585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 12483872 - 12483820
Alignment:
| Q |
14 |
atatttcattt-atttttctaattaaaattattttctagaagaaaattcctaa |
65 |
Q |
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| T |
12483872 |
atatttcattttatttttataattaaaattattttctagtagcaaattcctaa |
12483820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 84 - 290
Target Start/End: Original strand, 36677 - 36892
Alignment:
| Q |
84 |
atcttatagaaaaagcatgattgggaaaacgatgattcaggagctgcttcaagaggagattggtggaaaggtatcatttgacaatgtttgataaatatat |
183 |
Q |
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|||||||||| |||| |||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||| | ||| |||| |||||| |||||| |
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| T |
36677 |
atcttatagacaaagtatgattgggaaaacaatgattcagaagttgcttcaagaggagattggtggaaaggtatcttatgataatgcttgatatatatat |
36776 |
T |
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| Q |
184 |
---------ttgttctctaaaattttgcatatggctggaactagagtgacctaacattctcattgttttgttgtcttgttaattttccatcaccaacagg |
274 |
Q |
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| T |
36777 |
atatatatattgttctctaaacttttgcatatgaatggaactagagtggcctaacattctcattattttattgtcttgttaattttccatcaccaacaag |
36876 |
T |
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| Q |
275 |
gggtctttattattaa |
290 |
Q |
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|||||||||||||||| |
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| T |
36877 |
gggtctttattattaa |
36892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 36605 - 36657
Alignment:
| Q |
14 |
atatttcattt-atttttctaattaaaattattttctagaagaaaattcctaa |
65 |
Q |
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||||||||||| |||||| |||||||||||||||||||| || |||||||||| |
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| T |
36605 |
atatttcattttatttttataattaaaattattttctagtagcaaattcctaa |
36657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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