View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3446_low_13 (Length: 262)
Name: NF3446_low_13
Description: NF3446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3446_low_13 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 28840613 - 28840866
Alignment:
| Q |
7 |
gaagtgtggtttgatgattgaataattggtaaacttatatgttttgactcttatatgcagatgttgttgaaaattaccaagagatgggttgtttaaattt |
106 |
Q |
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| T |
28840613 |
gaagtgtggtttgattattgaataattggtaaacttatatgttttgactcttatatgcagatgttgttgaaaattaccaagagatgggttgtttaaattt |
28840712 |
T |
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| Q |
107 |
ggttaaggatataatattggagctaagcttggcataggatgaatggttgctccacatgcaggaaaattatacgctgccatattatatctcagacagtttg |
206 |
Q |
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| T |
28840713 |
ggttaaggatataatattggagctaagcttggcataggatgaatggttgctccacatgcaggaaaattatacgctgccatattatatctcagacaatatg |
28840812 |
T |
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| Q |
207 |
tcttactaatttgtcattaatttgtacgtacgcaagttataatgcagcatagctat |
262 |
Q |
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| T |
28840813 |
tctatctaatttgtcattaatttgtacgtacgcaagt--taatgcagcatagctat |
28840866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 22728756 - 22728967
Alignment:
| Q |
6 |
agaagtgtggtttgatgattgaataattggtaaacttatatgttttgactcttatatgcagatgttgttgaaaattaccaagagatgggttgtttaaatt |
105 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22728756 |
agaagggtggtttgattattgaataattggtaaacttatatgttttgattcttat--gcagatgttgttgaaaattaccaagagatgggttatttaaatt |
22728853 |
T |
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| Q |
106 |
tggttaaggatataatattggagctaagcttggcataggatgaatggttgctccacatgcaggaaaattatacgctgccatattatatctcagacagttt |
205 |
Q |
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| T |
22728854 |
aggttaaggatataatattggagctaagcgtggcgtagaatgaatggttgctcctcatgca-gaaaattatacgctgccatattatatctcagacaatat |
22728952 |
T |
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| Q |
206 |
gtcttactaatttgt |
220 |
Q |
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|||| ||||||||| |
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| T |
22728953 |
gtctatctaatttgt |
22728967 |
T |
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