View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3446_low_15 (Length: 250)
Name: NF3446_low_15
Description: NF3446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3446_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 30757376 - 30757619
Alignment:
| Q |
1 |
ttactttcttcttgtaaaaccaaagagaaattcttattcaaggtaggcaatggatccatcaataagactagagtcttcacaacaaaaaattgcttattga |
100 |
Q |
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| T |
30757376 |
ttactttcttcttgtaaaaccaaagagaaattcttattcaaggtaggcaatggatccatcaataagactagagtcttcacagcaaaaaattgcttattga |
30757475 |
T |
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| Q |
101 |
tgccagttaaaaactgaatgatttgatcctcacttctatatgtcttggtaagcttaagagcatcacatcaacattgatgataacaagtacaatttgggag |
200 |
Q |
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||| ||||||||||||||||||||| |||||| |||||||||| | |||| ||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
30757476 |
tgctagttaaaaactgaatgatttggtcctcatttctatatgtgtcagtaaccttaagagcatcacatcaacattgatgatgac-agtacaatttgggag |
30757574 |
T |
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| Q |
201 |
aggacgatgagaatgtaagtcttcccacaaagctttcatttcagt |
245 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
30757575 |
aggaggatgagaatgtaattcttcccacaaagctttcatttcagt |
30757619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 30764828 - 30765071
Alignment:
| Q |
1 |
ttactttcttcttgtaaaaccaaagagaaattcttattcaaggtaggcaatggatccatcaataagactagagtcttcacaacaaaaaattgcttattga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30764828 |
ttactttcttcttgtaaaaccaaagagaaattcttattcaaggtaggcaatggatccatcaataagactagagtcttcacagcaaaaaattgcttattga |
30764927 |
T |
|
| Q |
101 |
tgccagttaaaaactgaatgatttgatcctcacttctatatgtcttggtaagcttaagagcatcacatcaacattgatgataacaagtacaatttgggag |
200 |
Q |
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| T |
30764928 |
tgctagttaaaaactgaatgatttggtcctcatttctatatgtgtcagtaaccttaagagcatcacatcaacattgatgatgac-agtacaatttgggag |
30765026 |
T |
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| Q |
201 |
aggacgatgagaatgtaagtcttcccacaaagctttcatttcagt |
245 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
30765027 |
aggaggatgagaatgtaattcttcccacaaagctttcatttcagt |
30765071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 25227243 - 25227120
Alignment:
| Q |
2 |
tactttcttcttgtaaaaccaaagagaaattcttattcaaggtaggcaatggatccatcaataagactagagtcttcacaacaaaaaattgcttattgat |
101 |
Q |
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||||||||||||| ||||||||| ||||| ||| ||||||||||| | ||| ||||||||| ||| ||||||| |||||| ||||||||| | ||| |
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| T |
25227243 |
tactttcttcttgcaaaaccaaaaagaaaaccttgttcaaggtaggtagaagatacatcaataacacttgagtcttgacaacagaaaattgctcactgag |
25227144 |
T |
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| Q |
102 |
gccagttaaaaactgaatgatttg |
125 |
Q |
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| |||| ||||||||||||||||| |
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| T |
25227143 |
gtcagtcaaaaactgaatgatttg |
25227120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 25227070 - 25227020
Alignment:
| Q |
193 |
tttgggagaggacgatgagaatgtaagtcttcccacaaagctttcatttca |
243 |
Q |
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||||||||||||||||| |||||||| |||||||| ||||||||||||||| |
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| T |
25227070 |
tttgggagaggacgatgggaatgtaattcttcccataaagctttcatttca |
25227020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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