View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3446_low_17 (Length: 235)

Name: NF3446_low_17
Description: NF3446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3446_low_17
NF3446_low_17
[»] chr8 (14 HSPs)
chr8 (86-232)||(38613611-38613757)
chr8 (1-89)||(6311097-6311185)
chr8 (1-87)||(7290124-7290211)
chr8 (10-86)||(36979184-36979258)
chr8 (10-86)||(30655448-30655521)
chr8 (1-65)||(39785021-39785086)
chr8 (9-95)||(10689358-10689442)
chr8 (9-86)||(4760291-4760366)
chr8 (1-65)||(25328475-25328540)
chr8 (9-86)||(18870775-18870849)
chr8 (9-86)||(18853384-18853457)
chr8 (10-50)||(33038023-33038063)
chr8 (9-65)||(35745213-35745271)
chr8 (12-88)||(19752609-19752683)
[»] chr5 (19 HSPs)
chr5 (1-87)||(1457359-1457446)
chr5 (1-86)||(27444771-27444857)
chr5 (4-86)||(43598525-43598608)
chr5 (4-86)||(43604017-43604100)
chr5 (4-86)||(43609509-43609592)
chr5 (1-86)||(27449615-27449701)
chr5 (1-86)||(43592080-43592166)
chr5 (1-69)||(30631227-30631295)
chr5 (1-65)||(28807772-28807837)
chr5 (1-65)||(15044512-15044574)
chr5 (21-86)||(31180079-31180142)
chr5 (1-65)||(37556821-37556887)
chr5 (1-65)||(37561643-37561709)
chr5 (30-86)||(38191983-38192036)
chr5 (30-86)||(38219208-38219261)
chr5 (9-65)||(2785197-2785255)
chr5 (9-65)||(31397198-31397256)
chr5 (9-65)||(31402055-31402113)
chr5 (30-86)||(35387474-35387527)
[»] chr4 (11 HSPs)
chr4 (1-87)||(51520257-51520344)
chr4 (1-65)||(9224604-9224668)
chr4 (1-65)||(9229391-9229455)
chr4 (1-65)||(45348015-45348079)
chr4 (1-65)||(45357494-45357558)
chr4 (4-87)||(56146912-56146996)
chr4 (1-65)||(3813846-3813911)
chr4 (1-65)||(18855549-18855614)
chr4 (12-86)||(29760449-29760521)
chr4 (10-86)||(24741748-24741821)
chr4 (1-65)||(5732486-5732549)
[»] chr7 (13 HSPs)
chr7 (1-65)||(24024525-24024589)
chr7 (1-65)||(12396735-12396799)
chr7 (1-65)||(12406155-12406219)
chr7 (1-65)||(4866553-4866617)
chr7 (1-65)||(31109780-31109844)
chr7 (9-88)||(2057763-2057840)
chr7 (9-86)||(20357763-20357837)
chr7 (1-65)||(19992135-19992200)
chr7 (7-86)||(1533654-1533730)
chr7 (1-65)||(21812436-21812501)
chr7 (9-86)||(21645818-21645892)
chr7 (11-86)||(2479148-2479221)
chr7 (11-90)||(47263485-47263562)
[»] chr6 (12 HSPs)
chr6 (1-65)||(22010894-22010958)
chr6 (1-65)||(6438324-6438388)
chr6 (1-65)||(11856795-11856859)
chr6 (1-65)||(14737774-14737838)
chr6 (1-65)||(14742633-14742697)
chr6 (1-65)||(28155768-28155832)
chr6 (3-65)||(28184325-28184388)
chr6 (13-86)||(5674987-5675057)
chr6 (9-86)||(30126010-30126084)
chr6 (9-65)||(6005239-6005297)
chr6 (9-65)||(33336149-33336207)
chr6 (11-86)||(31936398-31936470)
[»] chr2 (10 HSPs)
chr2 (1-65)||(44312821-44312885)
chr2 (10-88)||(11099143-11099219)
chr2 (1-65)||(32246607-32246672)
chr2 (1-65)||(39812185-39812250)
chr2 (11-86)||(14291295-14291367)
chr2 (1-65)||(19344243-19344308)
chr2 (1-65)||(19349101-19349166)
chr2 (9-86)||(9296617-9296691)
chr2 (30-86)||(25403443-25403496)
chr2 (30-86)||(25398305-25398358)
[»] scaffold0135 (1 HSPs)
scaffold0135 (1-65)||(35259-35323)
[»] chr3 (14 HSPs)
chr3 (1-65)||(22173392-22173456)
chr3 (9-88)||(7167049-7167126)
chr3 (1-65)||(18656256-18656319)
chr3 (9-86)||(2671802-2671876)
chr3 (11-86)||(40373013-40373085)
chr3 (9-86)||(8739280-8739354)
chr3 (9-86)||(9091518-9091592)
chr3 (1-65)||(2677285-2677351)
chr3 (1-65)||(8512037-8512103)
chr3 (1-65)||(8516917-8516983)
chr3 (13-87)||(8477170-8477242)
chr3 (8-65)||(2673136-2673195)
chr3 (9-65)||(10207755-10207813)
chr3 (7-86)||(28504068-28504145)
[»] scaffold0127 (1 HSPs)
scaffold0127 (1-65)||(34146-34211)
[»] chr1 (10 HSPs)
chr1 (1-65)||(41386571-41386636)
chr1 (1-65)||(1055209-1055274)
chr1 (1-65)||(25445287-25445352)
chr1 (1-65)||(39445322-39445387)
chr1 (1-65)||(44024070-44024135)
chr1 (5-65)||(41398060-41398121)
chr1 (30-86)||(19359079-19359132)
chr1 (30-86)||(24203001-24203054)
chr1 (1-47)||(43988663-43988709)
chr1 (9-50)||(24787583-24787624)
[»] scaffold0355 (2 HSPs)
scaffold0355 (1-65)||(9837-9902)
scaffold0355 (24-65)||(101-143)
[»] scaffold0464 (1 HSPs)
scaffold0464 (1-65)||(185-250)
[»] scaffold0479 (1 HSPs)
scaffold0479 (4-65)||(13171-13233)
[»] scaffold0978 (1 HSPs)
scaffold0978 (9-87)||(453-528)
[»] scaffold0197 (1 HSPs)
scaffold0197 (9-65)||(19370-19428)
[»] scaffold0188 (1 HSPs)
scaffold0188 (30-86)||(24278-24331)
[»] scaffold0028 (1 HSPs)
scaffold0028 (9-65)||(149161-149219)
[»] scaffold0087 (1 HSPs)
scaffold0087 (11-86)||(44174-44247)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 86 - 232
Target Start/End: Complemental strand, 38613757 - 38613611
Alignment:
Q  86 agaagcaaaattcagcagattcaaaccttggcaacggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagttt 185  Q
    |||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38613757 agaagcaaaatcgagctgattcaaaccttggcaacggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagttt 38613658  T
Q  186 aaaattactcataattttgaaacctgggaccagagatgatgatgatg 232  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  38613657 aaaattactcataattttgaaagctgggaccagagaagatgatgatg 38613611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 6311185 - 6311097
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacagaa 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6311185 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggattcacaacagaa 6311097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 7290124 - 7290211
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaacag 87  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||  ||||||| |||||||||    
T  7290124 catttgttctcattgattaccactatctcttgctccacacatcaatgtttatttcattggtgtgagtttggaaccggattcacaacag 7290211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 36979258 - 36979184
Alignment:
Q  10 tcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    |||||||||||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||||| ||||||||    
T  36979258 tcattgattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagtttcaaccggattcacaaca 36979184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 30655521 - 30655448
Alignment:
Q  10 tcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    |||||||||||||||||| ||||||||||||||| ||||   |||||||||||||||||||||||||| ||||||||    
T  30655521 tcattgattaccactatctcttgctccacacatctttgt---tttcattggtgtgagtttcaaccggattcacaaca 30655448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 39785021 - 39785086
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 65  Q
    ||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||    
T  39785021 catttgttctcattgattatcactatcacttgctccacacatctttggtttatttcattggtgtga 39785086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 10689358 - 10689442
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacagaagcaaaa 95  Q
    ||||| ||||||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||| || ||||||| || |||||    
T  10689358 ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagtttcaaccgaaaacacaacacaatcaaaa 10689442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 4760291 - 4760366
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    ||||||||||||||||||| || |||||||||||| |||||  |||||||| ||||||||||||||||| ||||||||    
T  4760291 ctcattgattaccactatctctagctccacacatctttgtt--tttcattgatgtgagtttcaaccggattcacaaca 4760366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 25328475 - 25328540
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattg-tttatttcattggtgtga 65  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||| |||||    
T  25328475 catttgttctcattgattatcactatcacttgctccgcacatcattgatttatttcattgttgtga 25328540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 18870775 - 18870849
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    ||||| |||||||| |||| ||||||||||||||| ||||||   |||||||||||||||||||||||| ||||||||    
T  18870775 ctcatagattaccattatctcttgctccacacatctttgttt---tcattggtgtgagtttcaaccggattcacaaca 18870849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 18853384 - 18853457
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    ||||| ||||||||||||| |||||||||||||||    ||| |||| ||||||||||||||||||||| ||||||||    
T  18853384 ctcatagattaccactatctcttgctccacacatc----tttgtttcgttggtgtgagtttcaaccggattcacaaca 18853457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 33038023 - 33038063
Alignment:
Q  10 tcattgattaccactatcacttgctccacacatcattgttt 50  Q
    |||||||||||||||||| ||||||||||||||| ||||||    
T  33038023 tcattgattaccactatctcttgctccacacatctttgttt 33038063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 35745271 - 35745213
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 65  Q
    ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  35745271 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 35745213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 19752609 - 19752683
Alignment:
Q  12 attgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacaga 88  Q
    |||||||||||||  |  |||||||||||||| |||||| |||||||||||||| |||  |||||| ||||||||||    
T  19752609 attgattaccacttccttttgctccacacatctttgttt-tttcattggtgtga-tttttaccggattcacaacaga 19752683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 1457359 - 1457446
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaacag 87  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  1457359 catttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccggattcacaacag 1457446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 27444857 - 27444771
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 86  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||    
T  27444857 catttgtactcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccggattcacaaca 27444771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 43598608 - 43598525
Alignment:
Q  4 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 86  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||    
T  43598608 ttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccggattcacaaca 43598525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 43604100 - 43604017
Alignment:
Q  4 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 86  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||    
T  43604100 ttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccggattcacaaca 43604017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 43609592 - 43609509
Alignment:
Q  4 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 86  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||    
T  43609592 ttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccggattcacaaca 43609509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 27449701 - 27449615
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 86  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||  ||||||| ||||||||    
T  27449701 catttgtactcattgattaccactatctcttgctccacatatcattgtttatttcattggtgtgagtttggaaccggattcacaaca 27449615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 43592166 - 43592080
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 86  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||  ||||||| ||||||||    
T  43592166 catttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattgatgtgactttggaaccggattcacaaca 43592080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30631295 - 30631227
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt 69  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  30631295 catttgttctcatagattaccactatctcttgctccacacatcattgtttatttcatttgtgtgagttt 30631227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 28807772 - 28807837
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 65  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  28807772 catttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 28807837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 15044574 - 15044512
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 65  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||  ||||||||||||||||    
T  15044574 catttgttctcattgattaccactatcacttgctctacacgtcattg--tatttcattggtgtga 15044512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 31180142 - 31180079
Alignment:
Q  21 cactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    ||||||| |||||||||||||||||||||   ||||||||||||||||||||||||| ||||||||    
T  31180142 cactatctcttgctccacacatcattgtta--ttcattggtgtgagtttcaaccggattcacaaca 31180079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 37556821 - 37556887
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 65  Q
    |||||| |||||| ||||| ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  37556821 catttgctctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtga 37556887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 37561643 - 37561709
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 65  Q
    |||||| |||||| ||||| ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  37561643 catttgctctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtga 37561709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 38192036 - 38191983
Alignment:
Q  30 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    |||||||||||||| |||||||   ||||||||||||||||||||||| ||||||||    
T  38192036 ttgctccacacatctttgttta---cattggtgtgagtttcaaccggattcacaaca 38191983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 38219261 - 38219208
Alignment:
Q  30 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    |||||||||||||| |||||||   ||||||||||||||||||||||| ||||||||    
T  38219261 ttgctccacacatctttgttta---cattggtgtgagtttcaaccggattcacaaca 38219208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 2785255 - 2785197
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 65  Q
    ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2785255 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 2785197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 31397198 - 31397256
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 65  Q
    ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  31397198 ctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 31397256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 31402055 - 31402113
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 65  Q
    ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  31402055 ctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 31402113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 35387527 - 35387474
Alignment:
Q  30 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  35387527 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 35387474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 51520344 - 51520257
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaacag 87  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  51520344 catttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccggattcacaacag 51520257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 9224604 - 9224668
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 65  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9224604 catttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 9224668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 9229391 - 9229455
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 65  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9229391 catttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 9229455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 45348015 - 45348079
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 65  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45348015 catttgttctcatagattaccactatcacttgctccacacatcattgtttatttcattggtgtga 45348079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 45357494 - 45357558
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 65  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45357494 catttgttctcatagattaccactatcacttgctccacacatcattgtttatttcattggtgtga 45357558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 56146912 - 56146996
Alignment:
Q  4 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaacag 87  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||    
T  56146912 ttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgaatttggaaccggattcacaacag 56146996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3813911 - 3813846
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 65  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3813911 catttgctctcattgattaccactatcacttgctccacacatcattggtttatttcattggtgtga 3813846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 18855614 - 18855549
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 65  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  18855614 catttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 18855549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 29760521 - 29760449
Alignment:
Q  12 attgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    |||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||    
T  29760521 attgattaccactatctcttgctccacacatctttgttt--ttcattggtgtgagtttcaaccggattcacaaca 29760449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 24741821 - 24741748
Alignment:
Q  10 tcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    |||||||||||||||||| ||||||||||||||| ||||   |||||||||||||||||||||||||| ||||||||    
T  24741821 tcattgattaccactatctcttgctccacacatctttgt---tttcattggtgtgagtttcaaccggattcacaaca 24741748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 5732549 - 5732486
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 65  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||    
T  5732549 catttgttctcattgattaccaccatcacttgctccacacatcattgtat-tttcattggtgtga 5732486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 24024525 - 24024589
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24024525 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 24024589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 12396799 - 12396735
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 65  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12396799 catttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 12396735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 12406219 - 12406155
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 65  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12406219 catttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 12406155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 4866617 - 4866553
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 65  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4866617 catttgtcctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 4866553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 31109780 - 31109844
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 65  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  31109780 catttgttctcattgattatcactatcacttgctgcacacatcattgtttatttcattggtgtga 31109844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 2057840 - 2057763
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacaga 88  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||||    
T  2057840 ctcatagattaccactatctcttgctccacacatctttgttt--ttcattggtgtgagtttcaaccggattcacaacaga 2057763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 20357763 - 20357837
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||   |||||||||||||||||||||||| ||||||||    
T  20357763 ctcatagattaccactatctcttgctccacacatctttgttt---tcattggtgtgagtttcaaccggattcacaaca 20357837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 19992200 - 19992135
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 65  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| || |||||||||||||||||||    
T  19992200 catttgttctcattgattatcactatcacctgctccacacatctttggtttatttcattggtgtga 19992135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 1533654 - 1533730
Alignment:
Q  7 ttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    ||||||||||||||||||||   |||||||||||||| ||||   |||||||||||||||||| ||||||| ||||||||    
T  1533654 ttctcattgattaccactatattttgctccacacatctttgt---tttcattggtgtgagttttaaccggattcacaaca 1533730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 21812436 - 21812501
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 65  Q
    |||||| |||||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  21812436 catttgctctcatagattaccactatctcttgctccacacatctttggtttatttcattggtgtga 21812501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 21645892 - 21645818
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    ||||| ||||||||||  |  |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  21645892 ctcatagattaccactcccttttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 21645818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 2479221 - 2479148
Alignment:
Q  11 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaaca 86  Q
    |||||||||||||| ||  |||||||||||||| ||||||  ||||||||||||| | |||||||||| ||||||||    
T  2479221 cattgattaccact-tcctttgctccacacatctttgttt--ttcattggtgtgattatcaaccggaactcacaaca 2479148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 47263562 - 47263485
Alignment:
Q  11 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaacagaag 90  Q
    |||||||||||||| ||  ||||||||| |||| ||||||  ||||||||||||| | |||||||||| ||||||||||||    
T  47263562 cattgattaccact-tcctttgctccacgcatctttgttt--ttcattggtgtgattatcaaccggaactcacaacagaag 47263485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 22010894 - 22010958
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22010894 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 22010958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 6438388 - 6438324
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 65  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6438388 cattggttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 6438324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 11856859 - 11856795
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 65  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11856859 catttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 11856795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 14737774 - 14737838
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 65  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14737774 catttgttctcattgattatcactatcacttgctccacacatcattgtttatttcattggtgtga 14737838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 14742633 - 14742697
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 65  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14742633 catttgttctcattgattatcactatcacttgctccacacatcattgtttatttcattggtgtga 14742697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 28155768 - 28155832
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 65  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  28155768 catttgctctcattgattatcactatcacttgctccacacatcattgtttattgcattggtgtga 28155832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 28184388 - 28184325
Alignment:
Q  3 tttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 65  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  28184388 tttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 28184325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 5674987 - 5675057
Alignment:
Q  13 ttgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    |||||||||||||||  |||||||||||||| ||||||   |||||||||||||||| ||||||| ||||||||    
T  5674987 ttgattaccactatcttttgctccacacatctttgttt---tcattggtgtgagttttaaccggattcacaaca 5675057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 30126010 - 30126084
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    ||||| ||||| ||||| | ||||||||||||||| ||||||   |||||||||||| ||||||||||| ||||||||    
T  30126010 ctcatagattatcactacctcttgctccacacatctttgttt---tcattggtgtgattttcaaccggattcacaaca 30126084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 6005297 - 6005239
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 65  Q
    ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  6005297 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 6005239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 33336149 - 33336207
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 65  Q
    ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  33336149 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 33336207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 31936470 - 31936398
Alignment:
Q  11 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    ||||||||||||||  |  |||||||||||||| |||||  |||||||||||||| ||| ||||||| ||||||||    
T  31936470 cattgattaccacttccttttgctccacacatctttgtt--tttcattggtgtga-ttttaaccggattcacaaca 31936398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 44312821 - 44312885
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44312821 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 44312885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 11099143 - 11099219
Alignment:
Q  10 tcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacaga 88  Q
    |||||||||||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||||| ||||||||||    
T  11099143 tcattgattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagtttcaaccggattcacaacaga 11099219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 32246672 - 32246607
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 65  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32246672 catttgttctcatagattaccactatcacttgctccacacatcattggtttatttcattggtgtga 32246607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 39812185 - 39812250
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 65  Q
    ||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||    
T  39812185 catttgttctcattgattatcactatcacttgctccacacatctttggtttatttcattggtgtga 39812250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 14291367 - 14291295
Alignment:
Q  11 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    ||||||||||||||||| ||||||||||||| | ||||   |||||||||||||||||| ||||||| ||||||||    
T  14291367 cattgattaccactatctcttgctccacacacctttgt---tttcattggtgtgagttttaaccggattcacaaca 14291295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 19344308 - 19344243
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 65  Q
    |||||| |||||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  19344308 catttgctctcatagattaccactatctcttgctccacacatctttggtttatttcattggtgtga 19344243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 19349166 - 19349101
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 65  Q
    |||||| |||||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  19349166 catttgctctcatagattaccactatctcttgctccacacatctttggtttatttcattggtgtga 19349101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 9296617 - 9296691
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    ||||| ||||||||||| |  |||||||||||||| ||||||   |||||||||||||||| ||||||| ||||||||    
T  9296617 ctcatagattaccactaccttttgctccacacatctttgttt---tcattggtgtgagttttaaccggattcacaaca 9296691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 25403496 - 25403443
Alignment:
Q  30 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    |||||||||||||| |||||||   ||||||||||||||||||||||| ||||||||    
T  25403496 ttgctccacacatctttgttta---cattggtgtgagtttcaaccggattcacaaca 25403443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 25398358 - 25398305
Alignment:
Q  30 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    |||||||||||||| |||||||   |||||||||||||||||||| || ||||||||    
T  25398358 ttgctccacacatctttgttta---cattggtgtgagtttcaaccagattcacaaca 25398305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 35259 - 35323
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 65  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35259 catttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 35323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 22173392 - 22173456
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 65  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22173392 catttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 22173456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 7167126 - 7167049
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacaga 88  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||||    
T  7167126 ctcatagattaccactatctcttgctccacacatctttgttt--ttcattggtgtgagtttcaaccggattcacaacaga 7167049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 18656319 - 18656256
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 65  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||    
T  18656319 catttgttctcattgattaccaccatcacttgctccacacatcattgtat-tttcattggtgtga 18656256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 2671802 - 2671876
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    ||||| ||||||||||||| ||||||||||||||| ||||   |||||||||||||||||| ||||||| ||||||||    
T  2671802 ctcatagattaccactatctcttgctccacacatctttgt---tttcattggtgtgagttttaaccggattcacaaca 2671876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 40373013 - 40373085
Alignment:
Q  11 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    ||||||||||||||||| ||||||||||||| | ||||   |||||||||||||||||| ||||||| ||||||||    
T  40373013 cattgattaccactatctcttgctccacacacctttgt---tttcattggtgtgagttttaaccggattcacaaca 40373085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 8739280 - 8739354
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    ||||| ||||||||||||  ||||||||||||||| ||||   |||||||||||||||| ||||||| | ||||||||    
T  8739280 ctcatagattaccactatttcttgctccacacatctttgt---tttcattggtgtgagtctcaaccgaattcacaaca 8739354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 9091518 - 9091592
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    ||||| ||||||||||||  ||||||||||||||| ||||   |||||||||||||||| ||||||| | ||||||||    
T  9091518 ctcatagattaccactatttcttgctccacacatctttgt---tttcattggtgtgagtctcaaccgaattcacaaca 9091592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 2677285 - 2677351
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 65  Q
    |||||| |||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2677285 catttgctctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 2677351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 8512103 - 8512037
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 65  Q
    |||||| |||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  8512103 catttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 8512037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 8516983 - 8516917
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 65  Q
    |||||| |||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  8516983 catttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 8516917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 8477242 - 8477170
Alignment:
Q  13 ttgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttca-accggaatcacaacag 87  Q
    |||||||||||||||  |||||||||||||| ||||   |||||||||||||||||| | |||||| |||||||||    
T  8477242 ttgattaccactatcttttgctccacacatctttgt---tttcattggtgtgagttttataccggattcacaacag 8477170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 2673136 - 2673195
Alignment:
Q  8 tctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 65  Q
    |||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2673136 tctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 2673195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 10207813 - 10207755
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 65  Q
    ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  10207813 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 10207755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 28504068 - 28504145
Alignment:
Q  7 ttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    ||||||| ||||| ||||| |  ||||||||||||||||||||   ||||||||||||||||   |||||| ||||||||    
T  28504068 ttctcatagattatcactaccttttgctccacacatcattgtt--attcattggtgtgagttaagaccggattcacaaca 28504145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 34146 - 34211
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 65  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  34146 catttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 34211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 41386636 - 41386571
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 65  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  41386636 catttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 41386571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 1055209 - 1055274
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 65  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  1055209 catttgttcacattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 1055274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 25445287 - 25445352
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 65  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||    
T  25445287 catttgttctcattgattatcactatcgcttgctccacacatcattggtttatttcattggtgtga 25445352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 39445387 - 39445322
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 65  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  39445387 catttgttcacattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 39445322  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 44024070 - 44024135
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 65  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||    
T  44024070 catttgttctcattgattatcactatcagttgctccacacatcattggtttatttcattggtgtga 44024135  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 41398121 - 41398060
Alignment:
Q  5 tgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 65  Q
    ||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  41398121 tgttctcattgattatcactatcacttgctccacacataattggtttatttcattggtgtga 41398060  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 19359079 - 19359132
Alignment:
Q  30 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  19359079 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 19359132  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 24203001 - 24203054
Alignment:
Q  30 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    |||||||||||||| ||||||   |||||||||||||||| ||||||| ||||||||    
T  24203001 ttgctccacacatctttgttt---tcattggtgtgagttttaaccggattcacaaca 24203054  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43988663 - 43988709
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcattg 47  Q
    |||||| |||||| ||||| | |||||||||||||||||||||||||    
T  43988663 catttgctctcatagattatctctatcacttgctccacacatcattg 43988709  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 24787583 - 24787624
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcattgttt 50  Q
    |||||| |||||||||||| ||||||||||||||| ||||||    
T  24787583 ctcatttattaccactatctcttgctccacacatctttgttt 24787624  T

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Target: scaffold0355 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 9837 - 9902
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 65  Q
    |||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  9837 catttgctctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 9902  T

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Target: scaffold0355; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 101 - 143
Alignment:
Q  24 tatcacttgctccacacatcatt-gtttatttcattggtgtga 65  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  101 tatcacttgctccacacatcattggtttatttaattggtgtga 143  T

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Target: scaffold0464 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 250 - 185
Alignment:
Q  1 catttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 65  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| || |||||||||||||||||||    
T  250 catttgttctcattgattatcaccatcacttgctccacacatctttggtttatttcattggtgtga 185  T

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Target: scaffold0479 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 13233 - 13171
Alignment:
Q  4 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 65  Q
    |||||||||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||    
T  13233 ttgttctcattgattatcactatcacttgctccacatatctttggtttatttcattggtgtga 13171  T

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Target: scaffold0978 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 453 - 528
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacag 87  Q
    ||||| ||||||||||||| ||||||||||||||| ||||   |||||||||||||||||| ||  ||| |||||||||    
T  453 ctcatagattaccactatctcttgctccacacatctttgt---tttcattggtgtgagttttaaatggattcacaacag 528  T

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Target: scaffold0197 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 19370 - 19428
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 65  Q
    ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  19370 ctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 19428  T

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Target: scaffold0188 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 24278 - 24331
Alignment:
Q  30 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 86  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  24278 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 24331  T

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Target: scaffold0028 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 149161 - 149219
Alignment:
Q  9 ctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 65  Q
    ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  149161 ctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 149219  T

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Target: scaffold0087 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 44174 - 44247
Alignment:
Q  11 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaaca 86  Q
    |||||||||||||| ||  |||||||||||||| ||||||  ||||||||||||| | |||||||||| ||||||||    
T  44174 cattgattaccact-tcctttgctccacacatctttgttt--ttcattggtgtgattatcaaccggaactcacaaca 44247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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