View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3446_low_2 (Length: 541)
Name: NF3446_low_2
Description: NF3446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3446_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 21 - 535
Target Start/End: Original strand, 38608971 - 38609485
Alignment:
| Q |
21 |
catcagcgccaatgaggattaactatgtgagagttaaggttgctgacgtcattcgcaatgtgaagatagttgtgcacaacgtgtatttgccttttccgca |
120 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38608971 |
catcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgca |
38609070 |
T |
|
| Q |
121 |
tatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcattggaaggagcgggtgtcggagccagagctgctactgtatcagattct |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| ||||| |||||| |||| | ||| ||| ||||||| |
|
|
| T |
38609071 |
tatcaatcctattgcggctgcttatgatactatattaggaggtgaaggagcgtcggaaggagcaggtgttggagccggagcatcaactttattagattct |
38609170 |
T |
|
| Q |
221 |
gctggtcaggcgacggaagaatcctgctctgctcttgatggacgtggtgattgtgctgctgatgtcactgctgcagcaggtgtgtctcccatgcctcagg |
320 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
38609171 |
ccaggtcaggcgacggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctggtgtcactactacagcaggtgtgtctcccatgcctcagg |
38609270 |
T |
|
| Q |
321 |
tcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaat |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38609271 |
tcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaat |
38609370 |
T |
|
| Q |
421 |
ctctattaaatttgtagttaataagtttacagttacactgttgttcatatactaaagtgaaactctgaatttgtagttaactcacattgttgtttagttt |
520 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38609371 |
ctctatgaaatttgtagttaataagtttacagttacactgttgttcatgtactaaagtgaaactctgaatttgtagttaactcgcattgttgtttagttt |
38609470 |
T |
|
| Q |
521 |
gtggctctgtgctgc |
535 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
38609471 |
gtggctttgtgctgc |
38609485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 21 - 535
Target Start/End: Original strand, 38793754 - 38794268
Alignment:
| Q |
21 |
catcagcgccaatgaggattaactatgtgagagttaaggttgctgacgtcattcgcaatgtgaagatagttgtgcacaacgtgtatttgccttttccgca |
120 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38793754 |
catcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgca |
38793853 |
T |
|
| Q |
121 |
tatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcattggaaggagcgggtgtcggagccagagctgctactgtatcagattct |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| ||||| |||||| |||| | ||| ||| ||||||| |
|
|
| T |
38793854 |
tatcaatcctattgcggctgcttatgatactatattaggaggtgaaggagcgtcggaaggagcaggtgttggagccggagcatcaactttattagattct |
38793953 |
T |
|
| Q |
221 |
gctggtcaggcgacggaagaatcctgctctgctcttgatggacgtggtgattgtgctgctgatgtcactgctgcagcaggtgtgtctcccatgcctcagg |
320 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
38793954 |
ccaggtcaggcgacggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctggtgtcactactacagcaggtgtgtctcccatgcctcagg |
38794053 |
T |
|
| Q |
321 |
tcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaat |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38794054 |
tcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaat |
38794153 |
T |
|
| Q |
421 |
ctctattaaatttgtagttaataagtttacagttacactgttgttcatatactaaagtgaaactctgaatttgtagttaactcacattgttgtttagttt |
520 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38794154 |
ctctatgaaatttgtagttaataagtttacagttacactgttgttcatgtactaaagtgaaactctgaatttgtagttaactcgcattgttgtttagttt |
38794253 |
T |
|
| Q |
521 |
gtggctctgtgctgc |
535 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
38794254 |
gtggctttgtgctgc |
38794268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 21 - 451
Target Start/End: Complemental strand, 38121152 - 38120719
Alignment:
| Q |
21 |
catcagcgccaatgaggattaactatgtgagagttaaggttgctgacgtcattcgcaatgtgaagatagttgtgcacaacgtgtatttgccttttccgca |
120 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
38121152 |
catcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagattgttgtgcacagcgtgtatttgccttttccgca |
38121053 |
T |
|
| Q |
121 |
tatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcattggaaggagcgggtgtcggagccagagctgctactgtatcagattct |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38121052 |
tatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcatcggaaggagcgggtgtcggagccagagctgctactgtatcagattct |
38120953 |
T |
|
| Q |
221 |
gctggtcaggcgacggaagaatcctgctctgctcttgatggacgtggtgattgtgctgctgatgtcactgctgcagcaggtgtgtctcccatgcctcagg |
320 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38120952 |
gctggtcaggccacggaagaaacctgctctgctcctgatggacgtggtggttgtgctgctgatgtcactactgcagcaggtgtgtctcccatgcctcagg |
38120853 |
T |
|
| Q |
321 |
tcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatg---atgaagattgcggtttagttctttctctgctgaagtg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38120852 |
tcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgatgaagattgcggtttagttctttctctgctgaagtg |
38120753 |
T |
|
| Q |
418 |
aatctctattaaatttgtagttaataagtttaca |
451 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
38120752 |
aatctctatgaaatttgtagttaataagtttaca |
38120719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 296 - 406
Target Start/End: Original strand, 34592844 - 34592957
Alignment:
| Q |
296 |
gcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttc---gatgatgatgaagattgcg |
392 |
Q |
| |
|
||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
34592844 |
gcaggtgtgtctcccgtgcctcgggtcaggccaatggttgagattgaagatcaccatggcctgtgagtgtgatgcttcaatgatgatgatgaagattgcg |
34592943 |
T |
|
| Q |
393 |
gtttagttctttct |
406 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
34592944 |
gtttacttctttct |
34592957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 474 - 535
Target Start/End: Original strand, 34592970 - 34593031
Alignment:
| Q |
474 |
aaagtgaaactctgaatttgtagttaactcacattgttgtttagtttgtggctctgtgctgc |
535 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
34592970 |
aaagtgaaactctgaatttgtagttaacttgcattgttgtttagtttgtggctttgtgctgc |
34593031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 440
Target Start/End: Original strand, 38287450 - 38287498
Alignment:
| Q |
392 |
ggtttagttctttctctgctgaagtgaatctctattaaatttgtagtta |
440 |
Q |
| |
|
|||||| |||||| |||||||||||||| |||||| ||| ||||||||| |
|
|
| T |
38287450 |
ggtttacttctttttctgctgaagtgaaactctatgaaacttgtagtta |
38287498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 511
Target Start/End: Original strand, 38609502 - 38609538
Alignment:
| Q |
475 |
aagtgaaactctgaatttgtagttaactcacattgtt |
511 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
38609502 |
aagtgaaactttgaatttgtagttaattcacattgtt |
38609538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 511
Target Start/End: Original strand, 38794285 - 38794321
Alignment:
| Q |
475 |
aagtgaaactctgaatttgtagttaactcacattgtt |
511 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
38794285 |
aagtgaaactttgaatttgtagttaattcacattgtt |
38794321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 32 - 451
Target Start/End: Complemental strand, 28730715 - 28730296
Alignment:
| Q |
32 |
atgaggattaactatgtgagagttaaggttgctgacgtcattcgcaatgtgaagatagttgtgcacaacgtgtatttgccttttccgcatatcaatccta |
131 |
Q |
| |
|
||||||||||||||||| || || ||||||||||||||||| || |||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
28730715 |
atgaggattaactatgttagggtgaaggttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatttgccttttccgcatatcaatccta |
28730616 |
T |
|
| Q |
132 |
ttgcggctgcttatgatactatcttaggaggtgaaggagcattggaaggagcgggtgtcggagccagagctgctactgtatcagattctgctggtcaggc |
231 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28730615 |
ttgcggatgcttatgatactatcttaggaggtgaaggagcatcggaaggagcaggtgtcggagccagagctgctactgtatcagattctgctggtcaggc |
28730516 |
T |
|
| Q |
232 |
gacggaagaatcctgctctgctcttgatggacgtggtgattgtgctgctgatgtcactgctgcagcaggtgtgtctcccatgcctcaggtcaagccaatg |
331 |
Q |
| |
|
||| |||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28730515 |
gactgaagaaacctgctctgctcttgatgggcgtggtggctgtgctgctgatgtcactgctgcaacaggtgtgtctcccatgcctcaggtcaggccaatg |
28730416 |
T |
|
| Q |
332 |
gttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctattaaat |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| || ||| |||| |||||||||| |||| |||||||||||||||||| || || ||| |||| |
|
|
| T |
28730415 |
tttgagattgaagatcaccatggcctgtgagtgtgatggtttgatcatgacgaagattgcgatttacttctttctctgctgaagtaaaactatatgaaat |
28730316 |
T |
|
| Q |
432 |
ttgtagttaataagtttaca |
451 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
28730315 |
ttgtagttaataagtttaca |
28730296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 338 - 533
Target Start/End: Original strand, 33078483 - 33078657
Alignment:
| Q |
338 |
attgaagatcaccatggcctgtgagtgcgatgcttc---gatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctattaaatttg |
434 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| ||||||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
33078483 |
attgaagatcaccatgggctgtgactgcgatgcttcaatgatgatgatgaagatcgcggtttacttctttctctg------------------aaatttg |
33078564 |
T |
|
| Q |
435 |
tagttaataagtttacagttacactgttgttcatatactaaagtgaaactctgaatttgtagttaactcacattgttgtttagtttgtggctctgtgct |
533 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
33078565 |
tagttaataagtttac------actgttgttcatgtacaaaagtgaaactctgaatttgtagttaactcgcattgttgtttagtttgtggctttgtgct |
33078657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University