View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3446_low_3 (Length: 541)
Name: NF3446_low_3
Description: NF3446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3446_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 11 - 432
Target Start/End: Original strand, 45685635 - 45686056
Alignment:
| Q |
11 |
cacagaacccacctggtttaaggtcaaagttccagttttatcactgcaaattgtcgtagcagagcccatggtttcgcaggctgatagccttcgcacctgt |
110 |
Q |
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| T |
45685635 |
cacagaacccacctggtttaaggtcaaagttccagttttatcactgcaaattgtcgtagcagagcccatggtttcgcaggctgatagccttcgcacctgt |
45685734 |
T |
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| Q |
111 |
atcattgttaggaaatgtttcaacggaaaatatcgcaaattgttacaaaaattacaagagtattggagaaaataagatacttaccaaagctttgtctgcc |
210 |
Q |
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| T |
45685735 |
atcattgttaggaaatgtttcaacggaaaatatcgcaaattgttacaaaaattacaagagtattggagaaaataagatacttaccaaagctttgtctgcc |
45685834 |
T |
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| Q |
211 |
atcatcttccgcatcgagtatgccaggctgtcattaaagttgatgagattgtaaattacagagattagaataaacgtcagccaggttagtttttggctac |
310 |
Q |
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| T |
45685835 |
atcatcttccgcatcgagtatgccaggctgtcattaaagttgatgagattgtaaattacagagattagaataaacgtcagccaggttagtttttggctac |
45685934 |
T |
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| Q |
311 |
atcttgcattgtacaatgaaataaactagcaacatgtactcacgttaaggtaactgctaaaggtaaaccttctggcactgcgacaaccacaattgttacc |
410 |
Q |
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| T |
45685935 |
atcttgcattgtacaatgaaataaactagcaacatgtactcacgttaaggtaactgctaaaggtaaaccttctggcactgcgacaaccacaattgttacc |
45686034 |
T |
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| Q |
411 |
tgcacgactctatttagttgag |
432 |
Q |
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| T |
45686035 |
tgcacgactctatttagttgag |
45686056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 467 - 523
Target Start/End: Original strand, 45686091 - 45686147
Alignment:
| Q |
467 |
taatgtatttaacattagttataaatcacacttacagcaatggtaaaaattgcgatg |
523 |
Q |
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| T |
45686091 |
taatgtatttaacattagttataaatcacacttacagcaatggtaaaaattgcgatg |
45686147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 1441064 - 1440977
Alignment:
| Q |
22 |
cctggtttaaggtcaaagttccagttttatcactgcaaattgtcgtagcagagcccatggtttcgcaggctgatagccttcgcacctg |
109 |
Q |
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| T |
1441064 |
cctgatttaacgtcaatgttcctgtcttatcactgcaaattgttgtagcagagcccatagtttcacaggctgacagccttcgcacctg |
1440977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 1440885 - 1440836
Alignment:
| Q |
190 |
cttaccaaagctttgtctgccatcatcttccgcatcgagtatgccaggct |
239 |
Q |
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| T |
1440885 |
cttaccaaggctttatctgccatcattttccgcatcgagtatgccaggct |
1440836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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