View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3446_low_5 (Length: 386)

Name: NF3446_low_5
Description: NF3446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3446_low_5
NF3446_low_5
[»] chr5 (3 HSPs)
chr5 (40-322)||(1816370-1816656)
chr5 (317-370)||(1816288-1816342)
chr5 (163-253)||(33373391-33373481)
[»] chr8 (2 HSPs)
chr8 (119-253)||(40038346-40038481)
chr8 (143-253)||(27490324-27490435)
[»] chr1 (1 HSPs)
chr1 (126-253)||(35388656-35388784)
[»] chr2 (2 HSPs)
chr2 (183-248)||(16449618-16449683)
chr2 (181-253)||(32454795-32454867)
[»] chr7 (1 HSPs)
chr7 (164-226)||(8063094-8063156)
[»] chr6 (2 HSPs)
chr6 (163-236)||(33344351-33344424)
chr6 (163-236)||(35122468-35122541)
[»] chr4 (1 HSPs)
chr4 (184-253)||(6102929-6102998)


Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 40 - 322
Target Start/End: Complemental strand, 1816656 - 1816370
Alignment:
Q  40 ccacaaacaaggttccacatcaagcctcaacaccgacttcaattctaatgaaggagtcgatcaacatgttacatccaatcttgaagaacggccgagtttg 139  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  1816656 ccacaaacaaggctccacatcaagcctcaacaccgacttcaattctaatgaaggagtcgatcaaaatgttacatccaatcttgaagaacggctgagtttg 1816557  T
Q  140 atcaaaaaatccgcgcaacaattccctctctaagcacattttaaaaagaaatgttagaaatatactactttaaatcaaagatcttcatcagcaaagaaac 239  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | ||||||||||  |||||||||||||| ||||||| |    
T  1816556 atcaaaaaatccgcgcaacatttccctctctaagcacattttaaaaagaaatgttaggaatgtgctactttaaactaaagatcttcatcaacaaagaagc 1816457  T
Q  240 gtatgcatgcatatacatatgagtggtccgaattttgaa-aaaaggcataggacttcta---aacatatataaaataagtgaacttc 322  Q
    |||||||||||||||||||||| ||||| |||||||||| |||| ||| ||||||||||   ||| |||||||||||||||||||||    
T  1816456 gtatgcatgcatatacatatgactggtcagaattttgaaaaaaaagcagaggacttctaaagaacttatataaaataagtgaacttc 1816370  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 317 - 370
Target Start/End: Complemental strand, 1816342 - 1816288
Alignment:
Q  317 aacttcgataaactttcttttatttgttatttattaatt-ttttatgttaaatat 370  Q
    |||||||||| | |||||||||||||||||||||||||| |||||||||||||||    
T  1816342 aacttcgatatattttcttttatttgttatttattaattcttttatgttaaatat 1816288  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 253
Target Start/End: Original strand, 33373391 - 33373481
Alignment:
Q  163 ccctctctaagcacattttaaaaagaaatgttagaaatatactactttaaatcaaagatcttcatcagcaaagaaacgtatgcatgcatat 253  Q
    |||||||||||||||  ||  |||||||||||||||||||  | |||||||| ||| ||||| | || ||||||| | ||| |||||||||    
T  33373391 ccctctctaagcacacgttggaaagaaatgttagaaatatgttcctttaaatgaaaaatcttaaccaccaaagaatcatatacatgcatat 33373481  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 119 - 253
Target Start/End: Original strand, 40038346 - 40038481
Alignment:
Q  119 cttgaagaacggccgagtttgatcaaaaaatccgcgcaacaatt-ccctctctaagcacattttaaaaagaaatgttagaaatatactactttaaatcaa 217  Q
    ||||||||| ||||||| |||   ||||||||| ||||| | || |||||||||||||||| ||  ||||||||||||  ||||| || ||||||| |||    
T  40038346 cttgaagaatggccgagcttggctaaaaaatccacgcaaaagtttccctctctaagcacatgttggaaagaaatgttaagaatattctcctttaaaccaa 40038445  T
Q  218 agatcttcatcagcaaagaaacgtatgcatgcatat 253  Q
    ||||||||| || ||||||||||||| |||||||||    
T  40038446 agatcttcaccaacaaagaaacgtatccatgcatat 40038481  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 143 - 253
Target Start/End: Original strand, 27490324 - 27490435
Alignment:
Q  143 aaaaaatccgcgcaacaatt-ccctctctaagcacattttaaaaagaaatgttagaaatatactactttaaatcaaagatcttcatcagcaaagaaacgt 241  Q
    ||||||| |||||||||||| |||||||||||||||| ||| ||||||||||||| ||||| ||  |||||| ||||||||| |  || |||||||  ||    
T  27490324 aaaaaatacgcgcaacaatttccctctctaagcacatgttagaaagaaatgttaggaatatgctcttttaaaccaaagatctccgccaacaaagaagtgt 27490423  T
Q  242 atgcatgcatat 253  Q
    |||||| |||||    
T  27490424 atgcatacatat 27490435  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 253
Target Start/End: Original strand, 35388656 - 35388784
Alignment:
Q  126 aacggccgagtttgatcaaaaaatccgcgcaacaa-ttccctctctaagcacattttaaaaagaaatgttagaaatatactactttaaatcaaagatctt 224  Q
    |||||||||| |||| ||||||||  | ||||||| |||||||||||| ||||| ||  ||||||||||||| |||||||   ||||||  |||||||||    
T  35388656 aacggccgagcttgaccaaaaaatttgtgcaacaacttccctctctaaacacatgttggaaagaaatgttaggaatatacacttttaaactaaagatctt 35388755  T
Q  225 catcagcaaagaaacgtatgcatgcatat 253  Q
     | || |||||||  ||||||||||||||    
T  35388756 taccaacaaagaagtgtatgcatgcatat 35388784  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 16449618 - 16449683
Alignment:
Q  183 aaaagaaatgttagaaatatactactttaaatcaaagatcttcatcagcaaagaaacgtatgcatg 248  Q
    |||||||||||||| |||||||| |||||||||||| ||||| |||| ||||||||| ||| ||||    
T  16449618 aaaagaaatgttaggaatatacttctttaaatcaaacatctttatcaacaaagaaacatattcatg 16449683  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 253
Target Start/End: Original strand, 32454795 - 32454867
Alignment:
Q  181 taaaaagaaatgttagaaatatactactttaaatcaaagatcttcatcagcaaagaaacgtatgcatgcatat 253  Q
    |||| ||||||||||| ||||| || ||||||| ||||||| |||| || |||||||  ||||||||||||||    
T  32454795 taaagagaaatgttaggaatatgctcctttaaaccaaagattttcaccaacaaagaagtgtatgcatgcatat 32454867  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 8063156 - 8063094
Alignment:
Q  164 cctctctaagcacattttaaaaagaaatgttagaaatatactactttaaatcaaagatcttca 226  Q
    ||||||||||||||| ||  ||||||||||||| ||||| || ||||||| |||| |||||||    
T  8063156 cctctctaagcacatgttggaaagaaatgttaggaatatgctcctttaaaccaaaaatcttca 8063094  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 33344351 - 33344424
Alignment:
Q  163 ccctctctaagcacattttaaaaagaaatgttagaaatatactactttaaatcaaagatcttcatcagcaaaga 236  Q
    ||||||| |||||||| ||| ||||||||||||  |||||||| ||||||  |||| ||||||| || ||||||    
T  33344351 ccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaatcttcaccaacaaaga 33344424  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 35122541 - 35122468
Alignment:
Q  163 ccctctctaagcacattttaaaaagaaatgttagaaatatactactttaaatcaaagatcttcatcagcaaaga 236  Q
    ||||||| |||||||| ||| ||||||||||||  |||||||| ||||||  |||| ||||||| || ||||||    
T  35122541 ccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaatcttcaccaacaaaga 35122468  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 6102998 - 6102929
Alignment:
Q  184 aaagaaatgttagaaatatactactttaaatcaaagatcttcatcagcaaagaaacgtatgcatgcatat 253  Q
    ||||||||||||||||||| || |||  || ||||||| |||| || |||||||  ||||||||||||||    
T  6102998 aaagaaatgttagaaatatgctccttcgaaccaaagattttcaccaacaaagaagtgtatgcatgcatat 6102929  T

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