View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3446_low_6 (Length: 360)
Name: NF3446_low_6
Description: NF3446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3446_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 38038867 - 38038526
Alignment:
| Q |
1 |
caatgttcaagattttaaaatatgnnnnnnnn-tatcatacctgttgacatctttttccacaaaaagattcacgattgaactcatcactgttggcctcaa |
99 |
Q |
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| T |
38038867 |
caatgttcaagattttaaaatatgaaaaaaaaatatcatacctgttgacatctttttccacaaaaagattcacgattgaactcatcactgttggcctcaa |
38038768 |
T |
|
| Q |
100 |
cacagtttatatgatctacatgagagatataaagtttagtttattaatctttcaactatagagcacacatgatgctaagtttgatgttaacacattattt |
199 |
Q |
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| T |
38038767 |
cacagtttatatgatctacatgagagatataaagtttagtttatttatctttcaactatagagcacacatgatgctaagtttgatgttaacacattattt |
38038668 |
T |
|
| Q |
200 |
atcaaaaaagatttgtttctttttgatggggaaagaaaatacattattgagaaaagaatattgagttaattaatgaagaggagatatataattagtataa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38038667 |
atcaaaaaagatttgtttctttttgatggggaaagaaaatacattattgagaaaagaatattgagttaattaatgaagaggagatatataattagtataa |
38038568 |
T |
|
| Q |
300 |
gaaaaagaagaagagaaaatacatctggttctgcatgaagga |
341 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
38038567 |
gaaaaagaagaagagaaaatacatctggttctgcatgaagga |
38038526 |
T |
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