View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3446_low_8 (Length: 340)
Name: NF3446_low_8
Description: NF3446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3446_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 11908467 - 11908781
Alignment:
| Q |
18 |
cactcacccctaccaattaaaatcgcaaaatcgttggttttcacgattctggttaggattctgacaacaatatctgtaacatcagatccatagggtattt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11908467 |
cactcacccctaccaattaaaatcgcaaaatcgttggttttcacgattctggttaggattctgacaacaatatctgtaacatcagatccatagggtattt |
11908566 |
T |
|
| Q |
118 |
aagagggaataaaatggaatctaaaggtacatttataagtagccacgttgaaatttcaagnnnnnnnttcagtaacactttaggcattgtttatgtacca |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| |
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| T |
11908567 |
aagagggaataaaatggaatctaaaggtacatttataagtagccacgttgaaatttcaagaaaaaaattcagcaacacttcaggcattgtttatgtacca |
11908666 |
T |
|
| Q |
218 |
gattctatgaggctggtcaaaatctgtctaacagcttcactatccatatccatatgaactcctctgtaaatttcttcaagtacattctatctgttaaaca |
317 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11908667 |
gattctatgaggctggtcagaatctgtctaacagcttcactatccatatccatatgaactcctctgtaaatttcttcaagtacattctatcttttaaaca |
11908766 |
T |
|
| Q |
318 |
ctaattccttcatct |
332 |
Q |
| |
|
||||||||||||||| |
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| T |
11908767 |
ctaattccttcatct |
11908781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 15905308 - 15905359
Alignment:
| Q |
37 |
aaatcgcaaaatcgttggttttcacgattctggttaggattctgacaacaat |
88 |
Q |
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||||||||||||||| |||||||||||||||| | ||| ||||||||||||| |
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| T |
15905308 |
aaatcgcaaaatcgtgggttttcacgattctgatcaggtttctgacaacaat |
15905359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 180; Significance: 4e-97; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 37 - 332
Target Start/End: Original strand, 15579819 - 15580115
Alignment:
| Q |
37 |
aaatcgcaaaatcgttggttttcacgattctggttaggattctgacaacaatatctgtaacatcagatccatagggtatttaagagggaataaaatggaa |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| || |||||| |||||||| ||||||||| |
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| T |
15579819 |
aaatcgcaaaatcgttggttttcacgattctgaataggattctgacaacaatatctgtaacatcaggtccagagagtatttcagagggaagaaaatggaa |
15579918 |
T |
|
| Q |
137 |
tctaaaggtacatttataagtagccacgttgaaatttcaagnnnnnnnttcagtaacactttaggcat-tgtttatgtaccagattctatgaggctggtc |
235 |
Q |
| |
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|||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
15579919 |
tctaaaggtaaatttataagtagccacattgaaatttcaagaaaaaaattcaatgacactttaggcataattttatgtaccagattctgtgaggctggtc |
15580018 |
T |
|
| Q |
236 |
aaaatctgtctaacagcttcactatccatatccatatgaactcctctgtaaatttcttcaagtacattctatctgttaaacactaattccttcatct |
332 |
Q |
| |
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| | |||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| |||||| ||| |||||||||||||||||||||| |
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|
| T |
15580019 |
agagtctgtctagcagcttcactatccatatccatgtgaactcctctgtatatttcttcaagttcattctgtcttttaaacactaattccttcatct |
15580115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 37 - 332
Target Start/End: Complemental strand, 12050507 - 12050212
Alignment:
| Q |
37 |
aaatcgcaaaatcgttggttttcacgattctggttaggattctgacaacaatatctgtaacatcagatccatagggtatttaagagggaataaaatggaa |
136 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||| |||||||| |||||||||| | ||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
12050507 |
aaattgcaaaatcgtcggttttcacgattctggtaaggattctaacaacaatatatataacatcaggtccagagggtatttaagagggaataaaatggaa |
12050408 |
T |
|
| Q |
137 |
tctaaaggtacatttataagtagccacgttgaaatttcaag-nnnnnnnttcagtaacactttaggcattgtttatgtaccagattctatgaggctggtc |
235 |
Q |
| |
|
|||| || |||||||||||||||||| |||||||| ||||| |||| |||||| ||||||||| |||||||||||||||||||||| || || |
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| T |
12050407 |
tctacagatacatttataagtagccatgttgaaatatcaagaaaaaaaattcaataacaccttaggcattatttatgtaccagattctatgagattgatc |
12050308 |
T |
|
| Q |
236 |
aaaatctgtctaacagcttcactatccatatccatatgaactcctctgtaaatttcttcaagtacattctatctgttaaacactaattccttcatct |
332 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||| ||| ||||| ||||||||| ||||||| |||| | ||| |||||||||||||||||||||| |
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|
| T |
12050307 |
agaatctgtct-acagcttcactatccatatccatgtgatctcctttgtaaatttgttcaagttcattgtgtcttttaaacactaattccttcatct |
12050212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 37 - 328
Target Start/End: Complemental strand, 8334939 - 8334654
Alignment:
| Q |
37 |
aaatcgcaaaatcgttggttttcacgattctggttaggattctgacaacaatatctgtaacatcagatccatagggtatttaagagggaataaaatggaa |
136 |
Q |
| |
|
|||||||||||| || |||||||||||||||| ||||||||||||||||||| ||||| ||||||| || | || ||||||||||||||| |||| |||| |
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| T |
8334939 |
aaatcgcaaaattgtgggttttcacgattctgattaggattctgacaacaatgtctgt-acatcaggtcgagagtgtatttaagagggaagaaaacggaa |
8334841 |
T |
|
| Q |
137 |
tctaaaggtacatttataagtagccacgttgaaatttcaag-nnnnnnnttcagtaacactttaggcattgtttatgtaccagattctatgaggctggtc |
235 |
Q |
| |
|
|||| ||||||||| || ||||||||||| |||||||||| |||| ||||||| ||| || |||||||||| |||||||| |||| |
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| T |
8334840 |
gctaatggtacatttgtacgtagccacgtttaaatttcaagaaaaaaaattcaacaacacttcagggatagtttatgtac------ctatgaggtcggtc |
8334747 |
T |
|
| Q |
236 |
aaaatctgtctaacagcttcactatccatatccatatgaactcctctgtaaatttcttcaagtacattctatctgttaaacactaattccttc |
328 |
Q |
| |
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| |||||||||| |||||| | |||||||||||| || ||||||| | ||||||||||||| |||||| ||| |||||| ||||||||||| |
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| T |
8334746 |
agaatctgtctagcagctttagcatccatatccatgtgtgctcctctatgaatttcttcaagttcattctgtcttttaaacgctaattccttc |
8334654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 41022191 - 41022242
Alignment:
| Q |
37 |
aaatcgcaaaatcgttggttttcacgattctggttaggattctgacaacaat |
88 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| | ||||||||||| ||||| |
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|
| T |
41022191 |
aaatcgcaaaaacgtgggttttcacgattctgatcaggattctgacgacaat |
41022242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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