View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3446_low_9 (Length: 336)
Name: NF3446_low_9
Description: NF3446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3446_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 31703789 - 31703479
Alignment:
| Q |
18 |
taatcaaataccaaatatacaaaaaacacaattccaacctgcatattgcatgcaaccatctgagctccatacatccaccctaaaagtggcctaaaatttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31703789 |
taatcaaataccaaatatacaaaaaacacaattccaacctgcatattgcatgcaaccatctgagctccatacatccaccctaaaagtggcctaaaatttg |
31703690 |
T |
|
| Q |
118 |
tggatcggacacgttctcctttaggataaattctgaggatatttttctgtgtgaacctgaaaagcatatacatgtgaattaagatggtaggttttattca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31703689 |
aggatcggacacgttctcctttaggataaattctgaggatatttttctgtgtgaacctgaaaagcatatacatgtgaattaagatggtaggttttattca |
31703590 |
T |
|
| Q |
218 |
gcatgtcgtaggtgttgtcatacggtagaaatgctaatcgtcaagtaagtttgataggcacctaattagatcaggcccatgagatttagaagcagttttg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31703589 |
gcatgtcgtaggtgttgtcatacggtagaaatgctaattgtcaagtaagtttgataggcacctaattaggtcaggcccatgagatttagaagcagttttg |
31703490 |
T |
|
| Q |
318 |
agtttcttctc |
328 |
Q |
| |
|
||||||||||| |
|
|
| T |
31703489 |
agtttcttctc |
31703479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 34 - 185
Target Start/End: Complemental strand, 31653429 - 31653278
Alignment:
| Q |
34 |
atacaaaaaacacaattccaacctgcatattgcatgcaaccatctgagctccatacatccaccctaaaagtggcctaaaatttgtggatcggacacgttc |
133 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| |
|
|
| T |
31653429 |
ataccaaaaacacaattctaacctgcatattgaatgcaaccatctgagctccatacatccaccctaaatgtggcctaaaatttgtggattgaacacgttc |
31653330 |
T |
|
| Q |
134 |
tcctttaggataaattctgaggatatttttctgtgtgaacctgaaaagcata |
185 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || ||||||||||||| |||| |
|
|
| T |
31653329 |
tcctttaggataaattctaaggatatttttttgcgtgaacctgaaaaacata |
31653278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 328
Target Start/End: Complemental strand, 31653235 - 31653149
Alignment:
| Q |
242 |
gtagaaatgctaatcgtcaagtaagtttgataggcacctaattagatcaggcccatgagatttagaagcagttttgagtttcttctc |
328 |
Q |
| |
|
|||||||||||||| || | |||||||||||| |||||||||| || | |||||||| | |||||||| ||||||||||||||| |
|
|
| T |
31653235 |
gtagaaatgctaatgttcgtgaaagtttgataggtacctaattagctcggctccatgagactcagaagcagatttgagtttcttctc |
31653149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 35509024 - 35508955
Alignment:
| Q |
53 |
aacctgcatattgcatgcaaccatctgagctccatacatccaccctaaaagtggcctaaaatttgtggat |
122 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| | | ||||| | |||||||||||| |
|
|
| T |
35509024 |
aacctgcatattgaatgcaaccatctgagctccatacatccacccaagatgtggcttgaaatttgtggat |
35508955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 35522758 - 35522703
Alignment:
| Q |
54 |
acctgcatattgcatgcaaccatctgagctccatacatccaccctaaaagtggcct |
109 |
Q |
| |
|
|||||||| || |||| |||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
35522758 |
acctgcatgttaaatgcgaccatctgagctccatacatccaccctatatgtggcct |
35522703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University